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[191857_s_at] testes-specific protein like

Description T05A10.5 /REP_DB=WormBase Gene ID /WP=CE13189 /TR=P90958 /GB=CAA92136.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=testes-specific protein like
Cluster 6grp_total > 93      4grp_total > 19      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 41.1
(-3)
A 		48.6
(-1.9)
A 		59.7
(-0.2)
A 		80.9
(3)
A 		40
B 64.7
(0.6)
A 		83.9
(3)
A 		35.2
(-3)
A 		38.6
(-2.6)
A 		49
C 30.6
(-1.1)
A 		22.4
(-1.8)
A 		7
(-3)
A 		82.5
(3)
A 		76
avr 45.5
(-0.9) 		51.6
(0.2) 		34
(-3) 		67.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 717
1 2 3 4 5 6 range
A 77.1
(-2.8)
A 		58.6
(-3)
A 		57.3
(-3)
A 		142.6
(-2.2)
P 		672.1
(3)
P 		186.6
(-1.7)
P 		615
B 60.7
(-2.7)
A 		47.3
(-2.8)
A 		20.4
(-3)
A 		117.9
(-2.2)
P 		737.7
(3)
P 		125.1
(-2.1)
P 		717
C 41.9
(-3)
A 		59.2
(-2.8)
A 		51.4
(-2.9)
A 		143
(-2)
P 		680
(3)
P 		147.3
(-2)
P 		638
avr 59.9
(-2.8) 		55
(-2.9) 		43
(-3) 		134.5
(-2.2) 		696.6
(3) 		153
(-2) 		654
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15
(2.3)
A 		10.5
(-3)
A 		15.6
(3)
A 		11.8
(-1.5)
A 		5
B 20.6
(3)
A 		20.7
(3)
A 		8.2
(-3)
A 		8.2
(-3)
A 		13
C 10.1
(1)
A 		6.4
(-0.9)
A 		2.4
(-3)
A 		13.9
(3)
A 		12
avr 15.2
(3) 		12.5
(0.5) 		8.7
(-3) 		11.3
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 14.2
(-2.9)
A 		20.9
(-2.7)
A 		12.5
(-3)
A 		36.2
(-2.3)
P 		202.8
(3)
P 		45.4
(-2)
P 		190
B 21.1
(-2.7)
A 		15.8
(-2.8)
A 		5
(-3)
A 		31.2
(-2.5)
P 		299.7
(3)
P 		46.7
(-2.2)
P 		295
C 15.5
(-2.9)
A 		18.1
(-2.9)
A 		13.1
(-3)
A 		28.8
(-2.5)
P 		220
(3)
P 		49.3
(-2)
P 		207
avr 16.9
(-2.8) 		18.3
(-2.8) 		10.2
(-3) 		32.1
(-2.4) 		240.8
(3) 		47.1
(-2) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191857_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16361
Sequence Type Exemplar sequence
Representative Public ID T05A10.5 NCBI
Target Description T05A10.5 /REP_DB=WormBase Gene ID /WP=CE13189 /TR=P90958 /GB=CAA92136.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=testes-specific protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077401 NCBI Caenorhabditis elegans T05A10.5 (T05A10.5) mRNA, complete cds. 11/11 None
SNAP00000000838 ENSEMBL cdna:SNAP chromosome:CEL140:X:10789605:10791950:-1 11/11 None
GENEFINDER00000000844 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10789605:10792458:-1 11/11 None
T05A10.5 ENSEMBL cdna:known chromosome:CEL140:X:10789601:10790562:-1 gene:T05A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10789604-10790562(-) 100.0 100.0
Public Domain and Genome References
Gene Title testes-specific protein like
Ensembl T05A10.5
Entrez Gene 181273 Entrez gene
SwissProt P90958 EMBL-EBI
WormBase CE13189 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92136 Hypothetical protein T05A10.5 [Caenorhabditis elegans] ref|NP_509802.1| T05A10.5 [Caenorhabditis elegans] 1.0E-152
blast CAE70821 Hypothetical protein CBG17592 [Caenorhabditis briggsae] 1.0E-145
blast CAE70821 Hypothetical protein CBG17592 [Caenorhabditis briggsae] 1.0E-144
blast CAA92137 Hypothetical protein T05A10.4 [Caenorhabditis elegans] ref|NP_509803.1| T05A10.4 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-58
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-58
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 7.6E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000844 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:191857_S_AT
gataactcccttgtgtcagatgtcacccgcaatttcactttggagcaacacaatttttat
agatctcgtcttgcaaaaggttttgaatggaatggagaaacaaacacttcccagccaaag
gctagtcaaatgatcaaaatggagtatgactgcatgttggaacggtttgcacaaaactgg
gcaaataattgcgtttttgcacactcggcacattacgaaagaccgaatcagggtcagaat
ctctacatgagttctttctcaaaccctgatcctagaagccttatacatacggccgtcgag
aagtggtggcaggaattggaggagttcggtactccaattgataacgttctgacacccgaa
ttgtgggatttgaaagggaaagcgataggacattacactcagatggcctgggatcgtact
taccgtcttggttgtggaatcgcaaactgtccgaagatgtcgtacgtggtttgtcactat
gggccagcaggcaacagaaagaacaataaaatctatgaaatcggggatccttgcgaagtc
gatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACTCCCTTGTGTCAGATGTCA 412 423 148 Antisense
TCACCCGCAATTTCACTTTGGAGCA 190 625 170 Antisense
CAAACACTTCCCAGCCAAAGGCTAG 248 187 248 Antisense
GTTTTTGCACACTCGGCACATTACG 287 449 340 Antisense
CAAACCCTGATCCTAGAAGCCTTAT 592 189 407 Antisense
GAAGCCTTATACATACGGCCGTCGA 610 343 422 Antisense
TTGATAACGTTCTGACACCCGAATT 136 683 485 Antisense
CACTCAGATGGCCTGGGATCGTACT 351 197 543 Antisense
GGATCGTACTTACCGTCTTGGTTGT 578 505 558 Antisense
GTACGTGGTTTGTCACTATGGGCCA 555 455 609 Antisense
TCGGGGATCCTTGCGAAGTCGATGA 553 603 668 Antisense
Sequence Source Affymetrix Proprietary Database