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[191855_at] mitochondrial carrier protein

Description F43G9.3 /REP_DB=WormBase Gene ID /WP=CE10358 /TR=Q93717 /GB=CAB02107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 75      6grp_total > 18      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 942
(3)
P 		802.8
(-0.7)
P 		715.4
(-3)
P 		828
(-0)
P 		227
B 749.2
(3)
P 		688.5
(-1.1)
P 		659.4
(-3)
P 		687.6
(-1.1)
P 		90
C 958.6
(3)
P 		779.1
(-0.8)
P 		798.4
(-0.4)
P 		673.8
(-3)
P 		285
avr 883.3
(3) 		756.8
(-1.8) 		724.4
(-3) 		729.8
(-2.8) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 891.2
(0.8)
P 		841.5
(-2.3)
P 		839.7
(-2.4)
P 		852.8
(-1.6)
P 		829.4
(-3)
P 		927.3
(3)
P 		98
B 837.9
(-0.1)
P 		797.1
(-1.6)
P 		760
(-3)
P 		820.1
(-0.8)
P 		854.6
(0.5)
P 		922.4
(3)
P 		162
C 1147.1
(3)
P 		686.7
(-3)
P 		883.1
(-0.4)
P 		869.8
(-0.6)
P 		755.5
(-2.1)
P 		784.9
(-1.7)
P 		460
avr 958.7
(3) 		775.1
(-3) 		827.6
(-1.3) 		847.6
(-0.6) 		813.2
(-1.8) 		878.2
(0.4) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 343
(3)
P 		174.3
(-1.6)
P 		187
(-1.2)
P 		121.2
(-3)
P 		222
B 238.9
(3)
P 		170
(-1.5)
P 		152.8
(-2.6)
P 		146.5
(-3)
P 		92
C 317.3
(3)
P 		224
(0.3)
P 		278.3
(1.9)
P 		113.6
(-3)
P 		204
avr 299.7
(3) 		189.4
(-0.8) 		206
(-0.3) 		127.1
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 164.3
(-3)
P 		299.3
(3)
P 		182.9
(-2.2)
P 		216.3
(-0.7)
P 		250.3
(0.8)
P 		225.8
(-0.3)
P 		135
B 291.5
(0.9)
P 		265.3
(-0)
P 		184.5
(-3)
P 		217.2
(-1.8)
P 		347.2
(3)
P 		344
(2.9)
P 		163
C 425.2
(3)
P 		209.5
(-2.2)
P 		224.8
(-1.8)
P 		174.9
(-3)
P 		244.5
(-1.3)
P 		262.7
(-0.9)
P 		250
avr 293.7
(3) 		258
(0.8) 		197.4
(-3) 		202.8
(-2.7) 		280.7
(2.2) 		277.5
(2) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2302
Sequence Type Exemplar sequence
Representative Public ID F43G9.3 NCBI
Target Description F43G9.3 /REP_DB=WormBase Gene ID /WP=CE10358 /TR=Q93717 /GB=CAB02107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=mitochondrial carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059932 NCBI Caenorhabditis elegans F43G9.3 (F43G9.3) mRNA, complete cds. 11/11 None
SNAP00000043537 ENSEMBL cdna:SNAP chromosome:CEL140:I:8619304:8622887:-1 11/11 None
GENEFINDER00000043550 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8621032:8622887:-1 11/11 None
F43G9.3 ENSEMBL cdna:known chromosome:CEL140:I:8621212:8622912:-1 gene:F43G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8621142-8622818(-) 100.0 100.0
Public Domain and Genome References
Gene Title mitochondrial carrier protein
Ensembl F43G9.3
Entrez Gene 172656 Entrez gene
SwissProt Q93717 EMBL-EBI
WormBase CE10358 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255570_AT mitochondrial substrate carrier family protein at
CANINE_2:CFAAFFX.22212.1.S1_S_AT similar to F43G9.3 cfa
DROSGENOME1:150263_AT alternative testis transcripts open reading frame B dm
DROSOPHILA_2:1633573_A_AT alternative testis transcripts open reading frame B dm
DROSGENOME1:150263_AT alternative testis transcripts open reading frame A dm
DROSOPHILA_2:1633573_A_AT alternative testis transcripts open reading frame A dm
CHICKEN:GGAAFFX.25551.1.S1_AT similar to mitochondrial carrier protein (1J190) gga
CHICKEN:GGAAFFX.25551.2.S1_S_AT similar to mitochondrial carrier protein (1J190) gga
HU35KSUBB:RC_AA047697_AT hypothetical protein MGC26694 hs
HU35KSUBB:RC_Z39994_AT hypothetical protein MGC26694 hs
U133_X3P:HS.310574.0.A1_3P_AT hypothetical protein MGC26694 hs
U133_X3P:HS.20707.1.S1_3P_AT hypothetical protein MGC26694 hs
U133_X3P:HS.181767.0.A1_3P_AT hypothetical protein MGC26694 hs
HG-U133_PLUS_2:226737_AT hypothetical protein MGC26694 hs
HG-U133B:226737_AT hypothetical protein MGC26694 hs
HG-U133_PLUS_2:228921_AT hypothetical protein MGC26694 hs
HG-U133B:228921_AT hypothetical protein MGC26694 hs
HG-U133_PLUS_2:242274_X_AT hypothetical protein MGC26694 hs
HG-U133B:242274_X_AT hypothetical protein MGC26694 hs
HG-U95AV2:39190_S_AT hypothetical protein MGC26694 hs
HG-U95B:43211_AT hypothetical protein MGC26694 hs
HG-U95B:49412_AT hypothetical protein MGC26694 hs
HG-U95B:58986_AT hypothetical protein MGC26694 hs
HG-U95B:58992_G_AT hypothetical protein MGC26694 hs
HG-U133_PLUS_2:214029_AT Hypothetical protein MGC26694 hs
HG-U133A_2:214029_AT Hypothetical protein MGC26694 hs
HG-U133A:214029_AT Hypothetical protein MGC26694 hs
HG-U95AV2:39881_AT Hypothetical protein MGC26694 hs
HG-U95D:70259_AT Hypothetical protein MGC26694 hs
HU35KSUBB:RC_AA018449_AT Hypothetical protein MGC26694 hs
U133_X3P:HS.20707.0.A1_3P_AT Hypothetical protein MGC26694 hs
MOUSE430_2:1424790_AT RIKEN cDNA 2900084M01 gene mm
MOE430A:1424790_AT RIKEN cDNA 2900084M01 gene mm
MOUSE430A_2:1424790_AT RIKEN cDNA 2900084M01 gene mm
MG-U74BV2:105583_AT RIKEN cDNA 2900084M01 gene mm
MOE430B:1443637_AT RIKEN cDNA 2900084M01 gene mm
MOUSE430_2:1443637_AT RIKEN cDNA 2900084M01 gene mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02107 Hypothetical protein F43G9.3 [Caenorhabditis elegans] ref|NP_492333.1| F43G9.3 [Caenorhabditis elegans] 1.0E-155
blast CAB02107 Hypothetical protein F43G9.3 [Caenorhabditis elegans] ref|NP_492333.1| F43G9.3 [Caenorhabditis elegans] 1.0E-152
blast CAB02107 Hypothetical protein F43G9.3 [Caenorhabditis elegans] ref|NP_492333.1| F43G9.3 [Caenorhabditis elegans] 1.0E-151
blast CAE67090 Hypothetical protein CBG12501 [Caenorhabditis briggsae] 1.0E-147
blast CAE67090 Hypothetical protein CBG12501 [Caenorhabditis briggsae] 1.0E-143
blast CAB02108 Hypothetical protein F43G9.4 [Caenorhabditis elegans] ref|NP_492332.1| F43G9.4 [Caenorhabditis elegans] 1.0E-126
blast CAC70152 putative mitochondrial carrier protein [Brugia malayi] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 9.7E-33
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.3E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.0E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.4E-26
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 3.1E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492333.1 1 13-35
F43G9.3 1 13-35
SNAP00000043537 1 13-35
GENEFINDER00000043550 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:191855_AT
tcgatgcaattcgcagccttcgagcagtataaaaaattgctgaaagttgacgaaaatgga
agtcgaacacccgtgaaacgatatataacaggttctcttgccgccacaacagctacaatg
atcacttatcctttagacaccgcaaaagctcgtctttcagtctcttcaaaattacaatat
agttctttgaaacatgtttttgtaaaaacatataaagaaggtggtattcaactattgtac
agagggatttatccaactatactaggagtaataccatacgctggatcttccttcttcaca
tacgaaactcttaagattatgtatcgagatcatagaggtgaagttgaaaattcctactac
cgaatgttatttggaatgttagctggtttgatcggtcaatcatcgtcatatccactcgat
attgtgagaaggcggatgcaaacagggcgaattccgagtggatggagtcctcttagagct
ctaattcatatttatcatacggagggtttgaaacgaggattgtacaaaggattgagcatg
aattggctgaaaggaccaattgcagtcggagtctcgttcaccacttatgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATGCAATTCGCAGCCTTCGAGC 108 603 271 Antisense
GGAAGTCGAACACCCGTGAAACGAT 139 531 328 Antisense
ATATATAACAGGTTCTCTTGCCGCC 680 17 351 Antisense
CCGCCACAACAGCTACAATGATCAC 313 261 371 Antisense
TGATCACTTATCCTTTAGACACCGC 35 565 389 Antisense
AATACCATACGCTGGATCTTCCTTC 290 173 540 Antisense
GGAATGTTAGCTGGTTTGATCGGTC 330 533 643 Antisense
GATCGGTCAATCATCGTCATATCCA 99 419 660 Antisense
GATGGAGTCCTCTTAGAGCTCTAAT 430 407 731 Antisense
ACCAATTGCAGTCGGAGTCTCGTTC 301 85 825 Antisense
GAGTCTCGTTCACCACTTATGAAAA 499 399 839 Antisense
Sequence Source Affymetrix Proprietary Database