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[191854_at] protein transport protein

Description T14G10.5 /REP_DB=WormBase Gene ID /WP=CE06451 /TR=SW:Q22498 /GB=CAA93095.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein transport protein
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 06      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 75      6grp_total > 14      4grp_total > 51      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 851
1 2 3 4 range
A 1062.5
(-0.9)
P 		1505.2
(3)
P 		1213.6
(0.4)
P 		824.4
(-3)
P 		681
B 951.4
(-0.2)
P 		1175.7
(3)
P 		1066.3
(1.4)
P 		752.5
(-3)
P 		423
C 904.5
(-0.1)
P 		1114
(2.4)
P 		1169.1
(3)
P 		653.8
(-3)
P 		515
avr 972.8
(-0.4) 		1265
(3) 		1149.7
(1.7) 		743.6
(-3) 		521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 1267.4
(3)
P 		1181.1
(1.7)
P 		873.1
(-3)
P 		1102.5
(0.5)
P 		921.4
(-2.3)
P 		981.7
(-1.3)
P 		394
B 1165.1
(3)
P 		1021.6
(0.9)
P 		865.1
(-1.5)
P 		895.7
(-1)
P 		762
(-3)
P 		799.2
(-2.4)
P 		403
C 1256.5
(3)
P 		941.8
(-0.4)
P 		1234.6
(2.8)
P 		978.4
(0)
P 		916
(-0.6)
P 		694.5
(-3)
P 		562
avr 1229.7
(3) 		1048.2
(0.3) 		990.9
(-0.5) 		992.2
(-0.5) 		866.5
(-2.4) 		825.1
(-3) 		405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 386.8
(3)
P 		326.7
(1.6)
P 		317.3
(1.4)
P 		120.7
(-3)
P 		266
B 303.4
(3)
P 		290.4
(2.5)
P 		247.1
(0.6)
P 		160.4
(-3)
P 		143
C 299.4
(0.8)
P 		320.3
(1.2)
P 		407.5
(3)
P 		110.2
(-3)
P 		297
avr 329.9
(3) 		312.5
(2.5) 		324
(2.8) 		130.4
(-3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 233.6
(-1.9)
P 		420.1
(3)
P 		190.1
(-3)
P 		279.6
(-0.7)
P 		278
(-0.7)
P 		239
(-1.7)
P 		230
B 405.4
(3)
P 		340.1
(1)
P 		210.1
(-3)
P 		237.2
(-2.2)
P 		309.6
(0.1)
P 		298
(-0.3)
P 		195
C 465.7
(3)
P 		287.4
(-1)
P 		314.2
(-0.4)
P 		196.7
(-3)
P 		296.4
(-0.8)
P 		232.5
(-2.2)
P 		269
avr 368.2
(3) 		349.2
(2.1) 		238.1
(-3) 		237.8
(-3) 		294.7
(-0.4) 		256.5
(-2.1) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9924
Sequence Type Exemplar sequence
Representative Public ID T14G10.5 NCBI
Target Description T14G10.5 /REP_DB=WormBase Gene ID /WP=CE06451 /TR=SW:Q22498 /GB=CAA93095.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069453 NCBI Caenorhabditis elegans T14G10.5 (T14G10.5) mRNA, complete cds. 11/11 None
SNAP00000034620 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10152323:10155403:1 11/11 None
GENEFINDER00000034630 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10152323:10155403:1 11/11 None
T14G10.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:10151920:10155610:1 gene:T14G10.5 11/11 None
T14G10.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:10152309:10155608:1 gene:T14G10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10152328-10155409(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein transport protein
Ensembl T14G10.5
Entrez Gene 177891 Entrez gene
SwissProt Q22498 EMBL-EBI
WormBase CE06451 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12807_AT coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative at
ATH1-121501:253231_AT coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative at
CANINE:1585162_AT similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) cfa
CANINE_2:CFA.11751.1.A1_S_AT similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) cfa
CHICKEN:GGAAFFX.22475.1.S1_S_AT similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) gga
HG-U133B:223457_AT coatomer protein complex, subunit gamma 2 hs
HG-U133_PLUS_2:223457_AT coatomer protein complex, subunit gamma 2 hs
U133_X3P:G11094284_3P_AT coatomer protein complex, subunit gamma 2 hs
HG-U95E:77933_AT coatomer protein complex, subunit gamma 2 hs
HG-U133A_2:222298_AT Coatomer protein complex, subunit gamma 2 hs
HG-U133_PLUS_2:222298_AT Coatomer protein complex, subunit gamma 2 hs
HG-U133A:222298_AT Coatomer protein complex, subunit gamma 2 hs
HG-U133_PLUS_2:236131_AT Coatomer protein complex, subunit gamma 2 hs
HG-U133B:236131_AT Coatomer protein complex, subunit gamma 2 hs
HG-U95B:46388_AT Coatomer protein complex, subunit gamma 2 hs
HG-U95E:90497_AT Coatomer protein complex, subunit gamma 2 hs
HU35KSUBB:RC_AA130630_AT Coatomer protein complex, subunit gamma 2 hs
U133_X3P:HS.313803.0.A1_3P_AT Coatomer protein complex, subunit gamma 2 hs
MG-U74BV2:105758_AT coatomer protein complex, subunit gamma 2 mm
MOE430A:1448761_A_AT coatomer protein complex, subunit gamma 2 mm
MOUSE430A_2:1448761_A_AT coatomer protein complex, subunit gamma 2 mm
MOUSE430_2:1448761_A_AT coatomer protein complex, subunit gamma 2 mm
YEAST_2:1770113_AT Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo Sc
Protein Similarities
Method ID Description E-Value
blast CAA93095 Hypothetical protein T14G10.5 [Caenorhabditis elegans] ref|NP_501854.1| T14G10.5 [Caenorhabditis elegans] sp|Q22498|COPG_CAEEL Probable coatomer gamma subunit (Gamma-coat protein) (Gamma-COP) 0.0
blast CAE59922 Hypothetical protein CBG03408 [Caenorhabditis briggsae] 0.0
blast NP_571069 coatomer protein complex, subunit gamma 2 [Danio rerio] gb|AAF05717.1| coatomer protein gamma2-COP [Danio rerio] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191854_AT
tgaccagcttcttcttgatgtttctgttgaattggaagatccagatggagaatgggaaac
tggaaatactgttcaaattgataaacttccctatggagaagttcattcagccttttcact
tctagaattccctgattctggagccatctctggaagtttaggtgctattctcaagttcaa
ggtgatggatgtagatccaacttccggggaacctgattcggatgacacatacgagcaaac
atatgtgctggaagaagttgatgttaatgtgtcggattcggttcaaggagtcgcaaaatc
ttcatttggatctgcttgggaagcgttgggagacgatgcaacaagagaagaaacattcca
attgtcaacagtggaaaatattcctgatgctgtcaagaaaatatctgaaattttgggact
tgttccttgtgaacggtccgatcgtgttcctgaaggaaagacgcaacacacagtgttcct
ttccggagtttttcgtggtggatatgatgttctttcgaaagccacggtcgcggtggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCAGCTTCTTCTTGATGTTTCT 10 571 2001 Antisense
GGAGAAGTTCATTCAGCCTTTTCAC 30 519 2095 Antisense
AGCCTTTTCACTTCTAGAATTCCCT 707 83 2109 Antisense
GATTCTGGAGCCATCTCTGGAAGTT 269 433 2134 Antisense
TGTAGATCCAACTTCCGGGGAACCT 653 557 2190 Antisense
GGAACCTGATTCGGATGACACATAC 643 527 2208 Antisense
GTCGGATTCGGTTCAAGGAGTCGCA 19 471 2271 Antisense
GACTTGTTCCTTGTGAACGGTCCGA 629 161 2417 Antisense
GGTCCGATCGTGTTCCTGAAGGAAA 205 503 2435 Antisense
GCAACACACAGTGTTCCTTTCCGGA 336 319 2463 Antisense
CGAAAGCCACGGTCGCGGTGGATCC 224 251 2516 Antisense
Sequence Source Affymetrix Proprietary Database