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[191853_at] cAMP-regulated phosphoprotein

Description K10C3.2 /REP_DB=WormBase Gene ID /WP=CE19999 /TR=Q9XU56 /GB=CAB05775.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cAMP-regulated phosphoprotein
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 98      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 95      4grp_total > 03      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1610
1 2 3 4 range
A 887.7
(-2.6)
P 		1006.5
(-2.1)
P 		801.1
(-3)
P 		2234.4
(3)
P 		1433
B 1012.7
(-2.2)
P 		885.2
(-2.7)
P 		808.2
(-3)
P 		2411.4
(3)
P 		1603
C 997.7
(-2.6)
P 		972.9
(-2.7)
P 		907
(-3)
P 		2223.2
(3)
P 		1316
avr 966
(-2.5) 		954.9
(-2.5) 		838.8
(-3) 		2289.7
(3) 		1451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 678.7
(-2.7)
P 		728.5
(-2)
P 		654.3
(-3)
P 		834
(-0.6)
P 		906.6
(0.4)
P 		1105.1
(3)
P 		451
B 677.2
(-1.8)
P 		611
(-3)
P 		750.6
(-0.5)
P 		799.1
(0.4)
P 		944.9
(3)
P 		820.9
(0.8)
P 		334
C 912.4
(2)
P 		501.5
(-3)
P 		801.2
(0.6)
P 		757.9
(0.1)
P 		972.8
(2.7)
P 		998.4
(3)
P 		497
avr 756.1
(-0.6) 		613.7
(-3) 		735.4
(-1) 		797
(0) 		941.4
(2.4) 		974.8
(3) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 323.2
(2.8)
P 		218.5
(-2.5)
P 		209.4
(-3)
P 		327.1
(3)
P 		118
B 323
(-0.5)
P 		218.6
(-2.4)
P 		187.3
(-3)
P 		513.9
(3)
P 		327
C 330.3
(0.2)
P 		279.7
(-3)
P 		316.1
(-0.7)
P 		374.9
(3)
P 		95
avr 325.5
(0.1) 		238.9
(-3) 		237.6
(-3) 		405.3
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 125.1
(-3)
P 		259.1
(2.4)
P 		142.5
(-2.3)
P 		211.5
(0.5)
P 		273.6
(3)
P 		269.1
(2.8)
P 		149
B 235.6
(-1.4)
P 		203.4
(-2.4)
P 		182.3
(-3)
P 		211.7
(-2.1)
P 		383.9
(3)
P 		306.1
(0.7)
P 		202
C 338.2
(3)
P 		153
(-3)
P 		203.9
(-1.3)
P 		152.4
(-3)
P 		314.8
(2.2)
P 		334.2
(2.9)
P 		186
avr 233
(-0.7) 		205.2
(-1.8) 		176.2
(-3) 		191.9
(-2.4) 		324.1
(3) 		303.1
(2.1) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1666
Sequence Type Exemplar sequence
Representative Public ID K10C3.2 NCBI
Target Description K10C3.2 /REP_DB=WormBase Gene ID /WP=CE19999 /TR=Q9XU56 /GB=CAB05775.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cAMP-regulated phosphoprotein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060208 NCBI Caenorhabditis elegans K10C3.2 (K10C3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000018532 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9858760:9860669:-1 11/11 None
SNAP00000018522 ENSEMBL cdna:SNAP chromosome:CEL140:I:9859081:9859842:-1 11/11 None
K10C3.2.1 ENSEMBL cdna:known chromosome:CEL140:I:9858152:9859914:-1 gene:K10C3.2 11/11 A 
K10C3.2.2 ENSEMBL cdna:known chromosome:CEL140:I:9858152:9859912:-1 gene:K10C3.2 11/11 A 
K10C3.2.3 ENSEMBL cdna:known chromosome:CEL140:I:9858760:9860214:-1 gene:K10C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9858690-9859773(-) 100.0 100.0
Public Domain and Genome References
Gene Title cAMP-regulated phosphoprotein
Ensembl K10C3.2
Entrez Gene 172837 Entrez gene
SwissProt Q9XU56 EMBL-EBI
WormBase CE19999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05775 Hypothetical protein K10C3.2 [Caenorhabditis elegans] ref|NP_492609.1| K10C3.2 [Caenorhabditis elegans] 2.0E-58
blast CAB05775 Hypothetical protein K10C3.2 [Caenorhabditis elegans] ref|NP_492609.1| K10C3.2 [Caenorhabditis elegans] 6.0E-58
blast CAE60264 Hypothetical protein CBG03840 [Caenorhabditis briggsae] 3.0E-57
blast CAE60264 Hypothetical protein CBG03840 [Caenorhabditis briggsae] 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006760 EMBL-EBI cAMP-regulated phosphoprotein/endosulfine conserved region 2.3E-15
Pfam IPR006760 EMBL-EBI cAMP-regulated phosphoprotein/endosulfine conserved region 2.3E-15
Sequence
Target Sequence 
>C. ELEGANS:191853_AT
agaagccggagagttggccgtcagcagtggtgaaatcgcgaccggagccttgtcaccaga
gaaacagcaagagcaagagcttatgggcaaattggcggcaactggtaaacttcctgctcg
accggccagttcatttttgcagaagaagttgcaacagaggaaatttttcgactctggaga
ttatgcaatggacaagtcgaaagctggaacaggattgggatccaaaccgcatccactggc
cggaggacctccaccagcagctcccccagttgtcgcgcagagaagtcctgcaccagcagc
aaccactccgtctccatctgcttctccgatctcacagcagacaaatcggccaagttctga
tagaaatagtgatgatgacaatctgcagattccgcgtcccgacacagttccacagcgaaa
agcttcgattatcaacccaagtgtgcactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCGGAGAGTTGGCCGTCAGC 476 73 21 Antisense
AGTGGTGAAATCGCGACCGGAGCCT 248 53 46 Antisense
GGAGCCTTGTCACCAGAGAAACAGC 110 523 64 Antisense
GCAACTGGTAAACTTCCTGCTCGAC 47 321 118 Antisense
ACCGGCCAGTTCATTTTTGCAGAAG 520 87 141 Antisense
AGGATTGGGATCCAAACCGCATCCA 526 55 231 Antisense
GTCGCGCAGAGAAGTCCTGCACCAG 407 475 292 Antisense
TCTGCTTCTCCGATCTCACAGCAGA 606 609 337 Antisense
CACAGCAGACAAATCGGCCAAGTTC 347 195 353 Antisense
CCGACACAGTTCCACAGCGAAAAGC 53 263 419 Antisense
GATTATCAACCCAAGTGTGCACTGC 580 429 447 Antisense
Sequence Source Affymetrix Proprietary Database