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[191846_s_at] UDP-glucose dehydrogenase

Description F29F11.1 /REP_DB=WormBase Gene ID /WP=CE05767 /TR=SW:Q19905 /GB=CAA98269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucose dehydrogenase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 57      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1613
1 2 3 4 range
A 603.9
(-1.7)
P 		1579.1
(2.2)
P 		1772.8
(3)
P 		278.9
(-3)
P 		1494
B 447.7
(-2.5)
P 		1542.5
(3)
P 		1485.9
(2.7)
P 		354.7
(-3)
P 		1188
C 539.6
(-2.4)
P 		1479.9
(1.4)
P 		1891.5
(3)
P 		379.5
(-3)
P 		1512
avr 530.4
(-2.2) 		1533.8
(2.2) 		1716.7
(3) 		337.7
(-3) 		1379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1679
1 2 3 4 5 6 range
A 1119.1
(-3)
P 		1309.3
(-2.3)
P 		1809.6
(-0.3)
P 		2669.7
(3)
P 		1873.8
(-0.1)
P 		1697.3
(-0.8)
P 		1551
B 1145.2
(-3)
P 		1550
(-0.4)
P 		1721.8
(0.7)
P 		2089.8
(3)
P 		1552.7
(-0.4)
P 		1717.6
(0.6)
P 		945
C 990.5
(-3)
P 		1452.4
(-1)
P 		1949
(1.2)
P 		2350
(3)
P 		1916.2
(1.1)
P 		1913.3
(1.1)
P 		1360
avr 1084.9
(-3) 		1437.2
(-1.4) 		1826.8
(0.5) 		2369.8
(3) 		1780.9
(0.3) 		1776.1
(0.2) 		1285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 219.9
(-0.5)
P 		342.8
(1.3)
P 		463.4
(3)
P 		40.8
(-3)
P 		423
B 142.8
(-1.7)
P 		381
(3)
P 		344.3
(2.3)
P 		75.6
(-3)
P 		305
C 178.6
(-1.8)
P 		425.5
(0.6)
P 		659.2
(3)
P 		64
(-3)
P 		595
avr 180.4
(-1.3) 		383.1
(1.5) 		489
(3) 		60.1
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 206.3
(-3)
P 		465.7
(0.3)
P 		394.1
(-0.6)
P 		677.1
(3)
P 		565.4
(1.6)
P 		413.2
(-0.4)
P 		471
B 398.5
(-3)
P 		515.9
(-0.1)
P 		418.1
(-2.5)
P 		553.5
(0.8)
P 		630.8
(2.8)
P 		640.5
(3)
P 		242
C 367.2
(-3)
P 		443.2
(-1.3)
P 		496.1
(-0.2)
P 		472.6
(-0.7)
P 		620.1
(2.6)
P 		640.5
(3)
P 		273
avr 324
(-3) 		474.9
(0.2) 		436.1
(-0.6) 		567.7
(2.2) 		605.4
(3) 		564.7
(2.1) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191846_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13603
Sequence Type Exemplar sequence
Representative Public ID F29F11.1 NCBI
Target Description F29F11.1 /REP_DB=WormBase Gene ID /WP=CE05767 /TR=SW:Q19905 /GB=CAA98269.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucose dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073329 NCBI Caenorhabditis elegans SQuashed Vulva family member (sqv-4) (sqv-4) mRNA, complete cds. 11/11 None
SNAP00000022012 ENSEMBL cdna:SNAP chromosome:CEL140:V:10662352:10664049:-1 11/11 None
GENEFINDER00000022022 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10662352:10664049:-1 11/11 None
F29F11.1.2 ENSEMBL cdna:known chromosome:CEL140:V:10662217:10664053:-1 gene:F29F11.1 11/11 None
F29F11.1.1 ENSEMBL cdna:known chromosome:CEL140:V:10662232:10664051:-1 gene:F29F11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10662351-10664049(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucose dehydrogenase
Gene Symbol sqv-4
Ensembl F29F11.1
Entrez Gene 179484 Entrez gene
SwissProt Q19905 EMBL-EBI
WormBase CE05767 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256745_AT UDP-glucose 6-dehydrogenase, putative at
CANINE:1597756_AT similar to UDP-glucose dehydrogenase cfa
CANINE_2:CFA.20296.1.S1_AT similar to UDP-glucose dehydrogenase cfa
CANINE_2:CFAAFFX.24510.1.S1_S_AT similar to UDP-glucose dehydrogenase cfa
DROSOPHILA_2:1629352_AT sugarless dm
DROSGENOME1:141765_AT sugarless dm
CHICKEN:GGA.8846.1.S1_AT UDP-glucose dehydrogenase gga
CHICKEN:GGAAFFX.9083.1.S1_AT UDP-glucose dehydrogenase gga
HG-U133A_2:203343_AT UDP-glucose dehydrogenase hs
HG-U133A:203343_AT UDP-glucose dehydrogenase hs
HG-U133_PLUS_2:203343_AT UDP-glucose dehydrogenase hs
HG-FOCUS:203343_AT UDP-glucose dehydrogenase hs
HU35KSUBB:RC_R62173_F_AT UDP-glucose dehydrogenase hs
HU35KSUBC:RC_D60856_F_AT UDP-glucose dehydrogenase hs
HU35KSUBD:RC_AA454086_F_AT UDP-glucose dehydrogenase hs
U133_X3P:G4507812_3P_AT UDP-glucose dehydrogenase hs
HG-U95AV2:35214_AT UDP-glucose dehydrogenase hs
MG-U74AV2:102322_AT UDP-glucose dehydrogenase mm
MOE430A:1416308_AT UDP-glucose dehydrogenase mm
MOUSE430A_2:1416308_AT UDP-glucose dehydrogenase mm
MOUSE430_2:1416308_AT UDP-glucose dehydrogenase mm
MG-U74CV2:133981_AT UDP-glucose dehydrogenase, mRNA (cDNA clone MGC:11441 IMAGE:3708709) mm
MOE430B:1447411_AT UDP-glucose dehydrogenase, mRNA (cDNA clone MGC:11441 IMAGE:3708709) mm
MOUSE430_2:1447411_AT UDP-glucose dehydrogenase, mRNA (cDNA clone MGC:11441 IMAGE:3708709) mm
MU19KSUBB:TC34165_AT UDP-glucose dehydrogenase, mRNA (cDNA clone MGC:11441 IMAGE:3708709) mm
RG-U34A:AB013732_AT UDP-glucose dehydrogenase rn
RAE230A:1367938_AT UDP-glucose dehydrogenase rn
RAT230_2:1367938_AT UDP-glucose dehydrogenase rn
RAE230B:1384574_AT UDP-glucose dehydrogenase rn
RAT230_2:1384574_AT UDP-glucose dehydrogenase rn
RG-U34B:RC_AI059575_AT UDP-glucose dehydrogenase rn
RG-U34A:RC_AI103698_AT UDP-glucose dehydrogenase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98269 Hypothetical protein F29F11.1 [Caenorhabditis elegans] ref|NP_505730.1| SQuashed Vulva family member (sqv-4) [Caenorhabditis elegans] sp|Q19905|UGDH_CAEEL UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) gb|AAN39842.1| UDP-glucose dehydrogenase; SQV-4 [Caenorhabditis elegans] 0.0
blast CAE64869 Hypothetical protein CBG09668 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001732 EMBL-EBI UDP-glucose/GDP-mannose dehydrogenase 1.7E-98
Pfam IPR001732 EMBL-EBI UDP-glucose/GDP-mannose dehydrogenase 3.3E-51
Pfam IPR001732 EMBL-EBI UDP-glucose/GDP-mannose dehydrogenase 5.3E-57
Sequence
Target Sequence 
>C. ELEGANS:191846_S_AT
gttggctttggagggagctgcttccaaaaagatgtactctcacttgtatatctttgcgaa
tctctcaatcttccacaagtcgctgattattggcaaggagtgattaatattaacaactgg
caacgaagacgtttcgcagacaagattattgcggagttgtttaacacggtgactgataag
aaaattgcaatcttcggattcgctttcaagaagaacacaggtgacacacgcgaatcatca
gccattcacgtaatcaaacacttgatggaggagcatgcaaaattatcagtctacgatcca
aaagtgcagaaatcgcaaatgctcaacgatctggcttcggtgacaagtgcgcaagatgtt
gagcgtctcattactgttgagtcggatccatatgctgctgcacgtggtgctcacgcaatt
gttgtacttaccgagtgggatgaattcgttgaattgaactacagtcagattcataatgac
atgcagcatccagctgccatattcgatggaagactcattctggatcagaaagcattgcgt
gaaatcgggttccgtacattcgccattggaacttctccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCTTTGGAGGGAGCTGCTTCC 409 435 841 Antisense
GTACTCTCACTTGTATATCTTTGCG 705 459 874 Antisense
TTTGCGAATCTCTCAATCTTCCACA 208 669 893 Antisense
GCAATCTTCGGATTCGCTTTCAAGA 442 321 1027 Antisense
GACACACGCGAATCATCAGCCATTC 165 367 1063 Antisense
TGCTCAACGATCTGGCTTCGGTGAC 152 581 1160 Antisense
TGAGTCGGATCCATATGCTGCTGCA 364 567 1218 Antisense
GGTGCTCACGCAATTGTTGTACTTA 512 501 1246 Antisense
CAGCATCCAGCTGCCATATTCGATG 132 205 1324 Antisense
AAATCGGGTTCCGTACATTCGCCAT 438 117 1382 Antisense
CATTCGCCATTGGAACTTCTCCAGA 163 217 1397 Antisense
Sequence Source Affymetrix Proprietary Database