[Home] | [Total List]

[191845_at] protein-tyrosine phosphatase

Description C46A5.1 /REP_DB=WormBase Gene ID /WP=CE08751 /TR=Q18652 /GB=AAB03142.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 87      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 3.4
(-3)
A 		11.2
(3)
A 		6.2
(-0.8)
A 		4.5
(-2.2)
A 		8
B 42.6
(3)
A 		6
(-3)
A 		18.8
(-0.9)
A 		25.4
(0.2)
A 		37
C 4.8
(-2.8)
A 		20.7
(-1.5)
A 		2.5
(-3)
A 		75.9
(3)
A 		73
avr 16.9
(-1.2) 		12.6
(-2.2) 		9.2
(-3) 		35.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 51.7
(-1.1)
A 		3.7
(-3)
A 		32.7
(-1.9)
A 		27.3
(-2.1)
A 		101.6
(0.8)
P 		157.9
(3)
P 		154
B 56.7
(-1.2)
A 		34.1
(-3)
A 		40.3
(-2.5)
A 		55.1
(-1.4)
A 		75
(0.2)
A 		110.8
(3)
P 		77
C 35.7
(-1.4)
A 		44.8
(-0.9)
A 		3.8
(-3)
A 		62.7
(0)
A 		68.1
(0.3)
A 		120.3
(3)
P 		117
avr 48
(-1.7) 		27.5
(-2.9) 		25.6
(-3) 		48.4
(-1.7) 		81.6
(0.2) 		129.7
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.2
(-1.2)
A 		2.4
(3)
A 		1.6
(0.2)
A 		0.7
(-3)
A 		2
B 13.6
(3)
A 		1.5
(-3)
A 		4.3
(-1.6)
A 		5.4
(-1.1)
A 		12
C 1.6
(-2.6)
A 		5.9
(-0.5)
A 		0.9
(-3)
A 		12.8
(3)
A 		12
avr 5.5
(1.8) 		3.3
(-1.5) 		2.3
(-3) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.5
(-1.7)
A 		1.3
(-3)
A 		7.1
(-2.1)
A 		6.9
(-2.1)
A 		30.6
(1.7)
P 		38.5
(3)
P 		37
B 19.7
(-1.1)
A 		11.4
(-2.7)
A 		9.8
(-3)
A 		14.6
(-2.1)
A 		30.5
(0.9)
A 		41.3
(3)
P 		32
C 13.2
(-1.1)
A 		13.7
(-1.1)
A 		1
(-3)
A 		12.6
(-1.2)
A 		22.1
(0.2)
A 		40.3
(3)
P 		39
avr 14.1
(-1.6) 		8.8
(-2.5) 		6
(-3) 		11.4
(-2) 		27.7
(0.8) 		40
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9048
Sequence Type Exemplar sequence
Representative Public ID C46A5.1 NCBI
Target Description C46A5.1 /REP_DB=WormBase Gene ID /WP=CE08751 /TR=Q18652 /GB=AAB03142.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068876 NCBI Caenorhabditis elegans C46A5.1 (C46A5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025536 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7764159:7767041:1 11/11 None
C46A5.1 ENSEMBL cdna:known chromosome:CEL140:IV:7763914:7767077:1 gene:C46A5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025533 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7763968-7767014(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl C46A5.1
Entrez Gene 183497 Entrez gene
SwissProt Q18652 EMBL-EBI
WormBase CE08751 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03142 Hypothetical protein C46A5.1 [Caenorhabditis elegans] ref|NP_501277.1| C46A5.1 [Caenorhabditis elegans] 0.0
blast CAE70876 Hypothetical protein CBG17666 [Caenorhabditis briggsae] 1.0E-134
blast CAE70876 Hypothetical protein CBG17666 [Caenorhabditis briggsae] 1.0E-129
blast CAB01172 Hypothetical protein F38H4.4 [Caenorhabditis elegans] ref|NP_502243.1| F38H4.4 [Caenorhabditis elegans] 1.0E-123
blast CAB01172 Hypothetical protein F38H4.4 [Caenorhabditis elegans] ref|NP_502243.1| F38H4.4 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-63
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-63
Sequence
Target Sequence 
>C. ELEGANS:191845_AT
tctcatactgcttctgatttttggcaaatgattatcgatcagaaaatcaaatgtgttttg
ttgattatgaccgacggagaatttaataaatttggtggaaattcggtttttccacaaaat
caagattttctgaaattcgaagaccgattcattcgagttggagaattcaaacaggttgag
cttggaaaaggatggaatctgaaagtgttgagtgtttcaaatggaacctacaagacattc
attcatgtccatcactacaaaaactggcctcatggatcaatcccgtcggatgtaaaacag
atttggcaggtacaatcgtatcttcgaaagtacacagacggtcatccacctgtttatatg
agcatgtctgggtgtggaagagctggaacatttgcactttttgagacagcacacatgtca
ttgcacaatgagcaaccatcgttaaatatggtcaaatgtttggaaaatgttcgcaatggg
agacttcactctgttcagaatttgagtcaattttcggtagtctacactttgattgcagag
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATACTGCTTCTGATTTTTGGC 434 613 877 Antisense
CATTCATTCATGTCCATCACTACAA 77 217 1112 Antisense
AAAACTGGCCTCATGGATCAATCCC 254 131 1136 Antisense
TTGGCAGGTACAATCGTATCTTCGA 549 707 1179 Antisense
AAAGTACACAGACGGTCATCCACCT 533 121 1203 Antisense
ATCCACCTGTTTATATGAGCATGTC 472 39 1220 Antisense
GAGCTGGAACATTTGCACTTTTTGA 382 387 1256 Antisense
GAGACAGCACACATGTCATTGCACA 576 391 1279 Antisense
GGGAGACTTCACTCTGTTCAGAATT 591 495 1354 Antisense
TGAGTCAATTTTCGGTAGTCTACAC 310 565 1379 Antisense
GTAGTCTACACTTTGATTGCAGAGC 207 457 1393 Antisense
Sequence Source Affymetrix Proprietary Database