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[191841_at]

Description C40C9.5 /REP_DB=WormBase Gene ID /WP=CE18546 /TR=Q9XTG1 /GB=CAA19446.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Carboxylesterases (2 domains)
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 595.6
(3)
P 		342.3
(-1.3)
P 		238.7
(-3)
P 		265.2
(-2.6)
P 		357
B 511.6
(3)
P 		307.7
(-1.5)
P 		241.1
(-3)
P 		318.6
(-1.3)
P 		271
C 434.4
(3)
P 		343.7
(-0.6)
P 		284.1
(-3)
P 		350
(-0.4)
P 		150
avr 513.9
(3) 		331.2
(-1.2) 		254.6
(-3) 		311.3
(-1.7) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 407.9
(3)
P 		328.5
(0.6)
P 		253.1
(-1.6)
P 		216.4
(-2.7)
P 		252
(-1.7)
P 		208
(-3)
P 		200
B 437.3
(3)
P 		316.1
(-0.1)
P 		318
(-0.1)
P 		253.3
(-1.7)
P 		203.5
(-3)
P 		222.8
(-2.5)
P 		234
C 399.1
(2.4)
P 		423.6
(3)
P 		257.8
(-0.9)
P 		261.4
(-0.8)
P 		168.7
(-3)
P 		225.5
(-1.7)
P 		255
avr 414.8
(3) 		356.1
(1.3) 		276.3
(-1) 		243.7
(-2) 		208.1
(-3) 		218.8
(-2.7) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 216.9
(3)
P 		74.3
(-1.8)
P 		62.4
(-2.2)
P 		38.8
(-3)
P 		178
B 163.1
(3)
P 		76
(-1.9)
P 		55.9
(-3)
P 		67.9
(-2.3)
P 		107
C 143.8
(3)
P 		98.8
(-0.2)
P 		99
(-0.2)
P 		59
(-3)
P 		85
avr 174.6
(3) 		83
(-1.6) 		72.4
(-2.1) 		55.2
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 75.2
(-0.8)
P 		116.8
(3)
P 		55.1
(-2.6)
P 		54.9
(-2.6)
P 		76
(-0.7)
P 		50.6
(-3)
P 		66
B 152.2
(3)
P 		105.2
(-0.3)
P 		77.2
(-2.3)
P 		67.1
(-3)
P 		82.7
(-1.9)
P 		83.1
(-1.9)
P 		85
C 147.9
(3)
P 		129.3
(1.8)
P 		65.6
(-2.2)
P 		52.6
(-3)
P 		54.6
(-2.9)
P 		75.5
(-1.6)
P 		95
avr 125.1
(3) 		117.1
(2.3) 		66
(-2.3) 		58.2
(-3) 		71.1
(-1.8) 		69.7
(-2) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17753
Sequence Type Exemplar sequence
Representative Public ID C40C9.5 NCBI
Target Description C40C9.5 /REP_DB=WormBase Gene ID /WP=CE18546 /TR=Q9XTG1 /GB=CAA19446.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Carboxylesterases (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077882(11), NM_182454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077882 NCBI Caenorhabditis elegans NeuroLiGin family member (nlg-1) (nlg-1) mRNA, complete cds. 11/11 None
NM_182454 NCBI Caenorhabditis elegans NeuroLiGin family member (nlg-1) (nlg-1) mRNA, complete cds. 11/11 None
C40C9.5a ENSEMBL cdna:known chromosome:CEL140:X:13625329:13631036:-1 gene:C40C9.5 11/11 A 
C40C9.5b ENSEMBL cdna:known chromosome:CEL140:X:13625352:13631014:-1 gene:C40C9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13625608-13631014(-) 100.0 100.0
Public Domain and Genome References
Ensembl C40C9.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94208 Hypothetical protein C40C9.5a [Caenorhabditis elegans] emb|CAA19446.1| Hypothetical protein C40C9.5a [Caenorhabditis elegans] ref|NP_510283.1| NeuroLiGin family member (nlg-1) [Caenorhabditis elegans] 0.0
blast CAD57691 Hypothetical protein C40C9.5b [Caenorhabditis elegans] emb|CAD57709.1| Hypothetical protein C40C9.5b [Caenorhabditis elegans] ref|NP_872254.1| NeuroLiGin family member (nlg-1) [Caenorhabditis elegans] 0.0
blast CAE63107 Hypothetical protein CBG07402 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510283.1 1 684-706
NP_872254.1 1 684-706
C40C9.5a 1 684-706
C40C9.5b 1 684-706
Sequence
Target Sequence 
>C. ELEGANS:191841_AT
gaataactttatcccgcaattgcacaagaatggaaaggaaacagagcctgttggagaaga
gcatcatttgctgtcagatcatttccgaaaagactcttactttggaaaaacccgtcattt
ttcttcatatgcgaatcttccgttcccgccaccaccaatgcccccatcaccaccaccaga
gcttacaacaaagcccaaaccaagtgaatcgcccacaactctccaaacaacaactgaaag
tgaaaaggccgccgctggaagttttactggaaaagctctcggtggcgttattttcatcgg
ttgtggattcctcattatgaacgtttgcctattaattgctgttcgtagagaatggggaaa
gaagcggcggaacgagaagaagtttcaactgcagtatcagacttataactccaaccatgg
cggcggcgcggaacaatacaacagcttaaactcgccggaacccttactatccgcatcgca
caagaactcaacttcgatgcgacccgcgggaatatcaccaacgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATAACTTTATCCCGCAATTGCAC 257 327 1788 Antisense
ATTTGCTGTCAGATCATTTCCGAAA 543 17 1853 Antisense
TCTTCATATGCGAATCTTCCGTTCC 71 617 1909 Antisense
AACCAAGTGAATCGCCCACAACTCT 566 147 1985 Antisense
AAGCTCTCGGTGGCGTTATTTTCAT 287 149 2060 Antisense
TTTCATCGGTTGTGGATTCCTCATT 279 671 2079 Antisense
TCAGACTTATAACTCCAACCATGGC 308 623 2184 Antisense
TACAACAGCTTAAACTCGCCGGAAC 14 641 2224 Antisense
TACTATCCGCATCGCACAAGAACTC 386 645 2252 Antisense
CAAGAACTCAACTTCGATGCGACCC 625 185 2268 Antisense
ACCCGCGGGAATATCACCAACGTGT 605 87 2289 Antisense
Sequence Source Affymetrix Proprietary Database