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[191839_at] 7TM chemoreceptor, str family

Description Y39H10B.1 /REP_DB=WormBase Gene ID /WP=CE21784 /GEN=str-113 /TR=Q9UAX4 /GB=AAD14741.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 01      4grp_total > 27      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 10.1
(-2.8)
A 		67.9
(1.1)
A 		6.7
(-3)
A 		95.4
(3)
P 		89
B 25.4
(-3)
A 		62.1
(3)
A 		32.5
(-1.8)
A 		38.6
(-0.8)
A 		37
C 29.1
(-3)
A 		36.2
(-2.2)
A 		31.1
(-2.8)
A 		83.3
(3)
P 		54
avr 21.5
(-3) 		55.4
(1) 		23.4
(-2.8) 		72.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 53.8
(3)
A 		31.1
(0.4)
A 		22.9
(-0.6)
A 		2.3
(-3)
A 		25.7
(-0.3)
A 		52.7
(2.9)
A 		52
B 23.4
(-1.8)
A 		71.2
(3)
A 		28.3
(-1.3)
A 		11.1
(-3)
A 		32.5
(-0.9)
A 		20.9
(-2)
A 		60
C 26.6
(-0.5)
A 		61.2
(3)
A 		2.3
(-3)
A 		29
(-0.3)
A 		6.8
(-2.5)
A 		15.5
(-1.7)
A 		59
avr 34.6
(0) 		54.5
(3) 		17.8
(-2.5) 		14.1
(-3) 		21.7
(-1.9) 		29.7
(-0.7) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.7
(-2.1)
A 		14.7
(3)
A 		1.7
(-3)
A 		14
(2.7)
P 		13
B 8.1
(-2.5)
A 		15.3
(3)
A 		7.5
(-3)
A 		8.2
(-2.5)
A 		8
C 9.6
(-3)
A 		10.4
(-1.9)
A 		10.8
(-1.4)
A 		14
(3)
P 		4
avr 7.1
(-2.6) 		13.5
(3) 		6.7
(-3) 		12.1
(1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.9
(1.6)
A 		11.1
(2.2)
A 		5
(-0.8)
A 		0.6
(-3)
A 		7.7
(0.5)
A 		12.8
(3)
A 		12
B 8.1
(-1.5)
A 		23.7
(3)
A 		6.9
(-1.8)
A 		2.9
(-3)
A 		13.2
(-0)
A 		7.8
(-1.6)
A 		21
C 9.9
(0.1)
A 		18.7
(3)
A 		0.6
(-3)
A 		5.8
(-1.3)
A 		2.2
(-2.5)
A 		5.2
(-1.5)
A 		18
avr 9.3
(-0.5) 		17.8
(3) 		4.2
(-2.6) 		3.1
(-3) 		7.7
(-1.1) 		8.6
(-0.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15934
Sequence Type Exemplar sequence
Representative Public ID Y39H10B.1 NCBI
Target Description Y39H10B.1 /REP_DB=WormBase Gene ID /WP=CE21784 /GEN=str-113 /TR=Q9UAX4 /GB=AAD14741.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071624 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-113) (str-113) mRNA, complete cds. 11/11 None
GENEFINDER00000027899 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3664686:3666802:-1 11/11 None
Y39H10B.1 ENSEMBL cdna:known chromosome:CEL140:V:3664686:3666802:-1 gene:Y39H10B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027892 3/11 Cross Hyb Matching Probes None
SNAP00000027893 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3664685-3666802(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-113
Ensembl Y39H10B.1
Entrez Gene 191998 Entrez gene
SwissProt Q9UAX4 EMBL-EBI
WormBase CE21784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504025 Seven TM Receptor family member (str-113) [Caenorhabditis elegans] gb|AAD14741.1| Seven tm receptor protein 113 [Caenorhabditis elegans] 0.0
blast CAE62551 Hypothetical protein CBG06660 [Caenorhabditis briggsae] 1.0E-155
blast CAE65414 Hypothetical protein CBG10368 [Caenorhabditis briggsae] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.9E-19
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.6E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504025.1 7 15-34,46-68,92-114,133-155,202-224,250-272,282-304
Y39H10B.1 7 15-34,46-68,92-114,133-155,202-224,250-272,282-304
GENEFINDER00000027899 7 15-34,46-68,92-114,133-155,202-224,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:191839_AT
ggttcgcagcgtttattctgtacccggagaccgagaggaccaggacggcgttgatacacg
tcatacaaacatcctatgagctggatcccgagtgggtgggaaatgttccatatagctatt
ggcgcacagaaaacggagtggaatacctgaatcctcgcaacgtcatcgggatctttcaac
acggcgtcatcatgatcctctccttcggaacagtcttctactgcggattcaacacttata
agactttgaacggaagtctgggggtgtctgaaaaaacaaaagaaatgcacacccaattgt
tcaaggccttggttctacagactatcatccctactacactaatgtacatcccgacaacca
tgctctttgtcaccccattcgttggactcaacatcggctgttacggcaacatcactactg
ccaccgtccatttgtatcctggaattgacccagtcgttttgatctttataatccgagact
tccggcaaacgattttaagaccattcagatgcttctaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCGCAGCGTTTATTCTGTACCC 604 507 455 Antisense
CTATGAGCTGGATCCCGAGTGGGTG 273 181 528 Antisense
AATCCTCGCAACGTCATCGGGATCT 85 169 604 Antisense
TCAACACGGCGTCATCATGATCCTC 63 631 630 Antisense
GTCTTCTACTGCGGATTCAACACTT 35 469 667 Antisense
TGCACACCCAATTGTTCAAGGCCTT 149 577 740 Antisense
TCAAGGCCTTGGTTCTACAGACTAT 289 631 755 Antisense
TAATGTACATCCCGACAACCATGCT 8 637 794 Antisense
TGGACTCAACATCGGCTGTTACGGC 214 547 837 Antisense
GTTACGGCAACATCACTACTGCCAC 311 447 854 Antisense
AAGACCATTCAGATGCTTCTACCGT 321 153 951 Antisense
Sequence Source Affymetrix Proprietary Database