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[191838_at]

Description ZK1251.5 /REP_DB=WormBase Gene ID /WP=CE03852 /TR=Q23433 /GB=CAA92501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 74      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 1.7
(-2.8)
A 		2.5
(-1.6)
A 		1.6
(-3)
A 		5.4
(3)
A 		4
B 0.9
(-3)
A 		1.7
(-1.8)
A 		1.3
(-2.4)
A 		4.9
(3)
A 		4
C 2.9
(-2.4)
A 		1.7
(-2.7)
A 		0.7
(-3)
A 		24.6
(3)
A 		24
avr 1.8
(-2.7) 		2
(-2.5) 		1.2
(-3) 		11.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-0)
A 		1.1
(-2.3)
A 		1.7
(2.3)
A 		1.8
(3)
A 		1.5
(0.8)
A 		1
(-3)
A 		1
B 0.9
(-3)
A 		1.2
(-2.1)
A 		1.3
(-1.7)
A 		1.9
(0.2)
A 		1.6
(-0.8)
A 		2.8
(3)
A 		2
C 0.8
(-3)
A 		0.8
(-3)
A 		1.7
(1.2)
A 		2.1
(3)
A 		2.1
(3)
A 		1.8
(1.6)
A 		1
avr 1
(-3) 		1
(-3) 		1.6
(1) 		1.9
(3) 		1.7
(1.7) 		1.9
(3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-0)
A 		0.5
(-1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0
B 0.3
(-3)
A 		0.4
(-2.1)
A 		0.3
(-3)
A 		1
(3)
A 		1
C 0.9
(-1.9)
A 		0.5
(-2.5)
A 		0.2
(-3)
A 		4.1
(3)
A 		4
avr 0.6
(-1.9) 		0.5
(-2.3) 		0.3
(-3) 		2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-0)
A 		0.4
(3)
A 		0.4
(3)
A 		0.4
(3)
A 		0.4
(3)
A 		0.2
(-3)
A 		0
B 0.3
(-3)
A 		0.4
(-2.1)
A 		0.3
(-3)
A 		0.5
(-1.3)
A 		0.7
(0.4)
A 		1
(3)
A 		1
C 0.3
(-1.8)
A 		0.2
(-3)
A 		0.4
(-0.6)
A 		0.4
(-0.6)
A 		0.7
(3)
A 		0.6
(1.8)
A 		1
avr 0.3
(-3) 		0.3
(-3) 		0.4
(-1) 		0.4
(-1) 		0.6
(3) 		0.6
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9452
Sequence Type Exemplar sequence
Representative Public ID ZK1251.5 NCBI
Target Description ZK1251.5 /REP_DB=WormBase Gene ID /WP=CE03852 /TR=Q23433 /GB=CAA92501.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068374
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK1251.5 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:9687028:9688187:-1 gene:ZK1251.5 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023384 7/11 Cross Hyb Matching Probes None
GENEFINDER00000023396 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9687033-9688193(-) 100.0 100.0
chrIV:5304051-5305949(-) 93.47 93.47
Public Domain and Genome References
Ensembl ZK1251.5
Sequence
Target Sequence 
>C. ELEGANS:191838_AT
tcagattcctcaacagccaatgatcgataaaactctggtgatgtcaacaatgcgcatttc
gaagccaggagacaatgcagttgtcaaaattgtaaagcatattcattggcgcaattggcc
tgatcacggtgttcccgacaattttctgtcaccgttccgtttgttgactgttgtcaagag
ttgcacaaaaccaatagttgtacactgctctgctggtgtcggtcgaacaggcacgcttgc
tctcattttgattatcctcgagtcaatttgtcttccggatttcattggagttccacgcct
tctggcaaaacttcgagaggagcgtttcagagcaatccaaacggaagtgcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATTCCTCAACAGCCAATGATC 518 623 129 Antisense
GATTCCTCAACAGCCAATGATCGAT 324 433 132 Antisense
AACAGCCAATGATCGATAAAACTCT 657 135 140 Antisense
AACAATGCGCATTTCGAAGCCAGGA 703 133 174 Antisense
GCGCATTTCGAAGCCAGGAGACAAT 31 289 180 Antisense
GTAAAGCATATTCATTGGCGCAATT 630 461 220 Antisense
GCATATTCATTGGCGCAATTGGCCT 592 307 225 Antisense
CTCTGCTGGTGTCGGTCGAACAGGC 271 231 336 Antisense
TGCTGGTGTCGGTCGAACAGGCACG 451 581 339 Antisense
GAGCGTTTCAGAGCAATCCAAACGG 438 385 448 Antisense
GAGCAATCCAAACGGAAGTGCAATA 395 389 458 Antisense
Sequence Source Affymetrix Proprietary Database