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[191837_at] UDP-glucuronosyltransferase

Description K04A8.10 /REP_DB=WormBase Gene ID /WP=CE11718 /TR=Q94260 /GB=AAC48056.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 91      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 34.8
(-3)
A 		43.2
(-1.2)
A 		40.9
(-1.7)
P 		63
(3)
A 		28
B 3.6
(-3)
A 		32.2
(3)
A 		28.2
(2.2)
A 		3.6
(-3)
A 		29
C 15.2
(-3)
A 		29.9
(-1.1)
A 		35.7
(-0.4)
P 		62.7
(3)
A 		48
avr 17.9
(-3) 		35.1
(1.1) 		34.9
(1) 		43.1
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 35.3
(3)
A 		19.5
(-0.5)
A 		10.9
(-2.5)
A 		27.8
(1.3)
A 		21.4
(-0.1)
A 		8.5
(-3)
A 		27
B 25.3
(0.7)
A 		10.7
(-3)
A 		28.5
(1.5)
A 		31.8
(2.3)
A 		34.4
(3)
A 		24.8
(0.6)
A 		24
C 22.1
(1.3)
A 		16
(-0.4)
A 		7.1
(-3)
A 		18.5
(0.3)
A 		27.9
(3)
A 		12.2
(-1.5)
A 		21
avr 27.6
(2.9) 		15.4
(-2.9) 		15.5
(-2.9) 		26
(2.1) 		27.9
(3) 		15.2
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.7
(3)
A 		9.4
(-2.7)
A 		10.7
(-0.4)
P 		9.2
(-3)
A 		4
B 1.1
(-2.7)
A 		7.9
(3)
A 		6.5
(1.8)
A 		0.8
(-3)
A 		7
C 5
(-3)
A 		8.6
(-0.1)
A 		12.5
(3)
P 		10.6
(1.5)
A 		8
avr 6.3
(-3) 		8.6
(0.8) 		9.9
(3) 		6.9
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.5
(2.3)
A 		6.9
(2.8)
A 		2.4
(-2.6)
A 		7.1
(3)
A 		6.5
(2.3)
A 		2.1
(-3)
A 		5
B 8.8
(0)
A 		3.6
(-3)
A 		6.9
(-1.1)
A 		8.4
(-0.2)
A 		14
(3)
A 		9.3
(0.3)
A 		10
C 8.2
(2.3)
A 		4.9
(-0.4)
A 		1.8
(-3)
A 		3.7
(-1.4)
A 		9
(3)
A 		4.1
(-1.1)
A 		7
avr 7.8
(1) 		5.1
(-1.6) 		3.7
(-3) 		6.4
(-0.3) 		9.8
(3) 		5.2
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12284
Sequence Type Exemplar sequence
Representative Public ID K04A8.10 NCBI
Target Description K04A8.10 /REP_DB=WormBase Gene ID /WP=CE11718 /TR=Q94260 /GB=AAC48056.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072269 NCBI Caenorhabditis elegans K04A8.10 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
K04A8.10 ENSEMBL cdna:known chromosome:CEL140:V:6571548:6573476:-1 gene:K04A8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6571547-6573476(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Ensembl K04A8.10
Entrez Gene 186975 Entrez gene
SwissProt Q94260 EMBL-EBI
WormBase CE11718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48056 Hypothetical protein K04A8.10 [Caenorhabditis elegans] ref|NP_504670.1| K04A8.10 [Caenorhabditis elegans] 0.0
blast CAA99951 Hypothetical protein ZC443.6 [Caenorhabditis elegans] emb|CAA99789.1| Hypothetical protein ZC443.6 [Caenorhabditis elegans] ref|NP_506210.1| ZC443.6 [Caenorhabditis elegans] 4.0E-94
blast CAE56882 Hypothetical protein CBG24721 [Caenorhabditis briggsae] 7.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.4E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504670.1 2 5-27,364-386
K04A8.10 2 5-27,364-386
Sequence
Target Sequence 
>C. ELEGANS:191837_AT
gtagcgaatgcaacgttggcagatcatcttccaaatgttaaactgattacttggatgcca
caaaatgatattcttgctgatgagcgactaacactttttataactcacggtggacttgga
agttctgtggagattgcttaccaagggaaaccggcagttgttatcccattaatgtctgat
caaccaagaaatgctcacatgatcacaagacatggtggtgcccttcaattggataaaact
ttattgaataaaccagaagaaattataaaagctatccaaactgttttgaatgatgtcaat
tacaagcacaacgcagaacgccttgccaaaattcttgaagaacagccacacaaaccgaag
gatgtggttctgaaacattgtgactttgctgttcaatttggttcattagatacattgaat
tcagaaggaagattattaaatactttccaattttattcttttgatattcctcttgctatt
tttgttattgtatgtattattttgtttgtagtttatcttgttatcaaacttttattcagg
tttatcggacgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCGAATGCAACGTTGGCAGATC 648 455 646 Antisense
GCTGATGAGCGACTAACACTTTTTA 26 295 721 Antisense
TAACTCACGGTGGACTTGGAAGTTC 80 629 746 Antisense
GGAAGTTCTGTGGAGATTGCTTACC 641 531 763 Antisense
GCTTACCAAGGGAAACCGGCAGTTG 436 259 781 Antisense
GAAATGCTCACATGATCACAAGACA 80 363 833 Antisense
CAAGACATGGTGGTGCCCTTCAATT 700 183 851 Antisense
AACGCAGAACGCCTTGCCAAAATTC 563 145 955 Antisense
ACATTGTGACTTTGCTGTTCAATTT 77 105 1020 Antisense
ATTCTTTTGATATTCCTCTTGCTAT 528 11 1100 Antisense
TTTATTCAGGTTTATCGGACGACAA 13 675 1176 Antisense
Sequence Source Affymetrix Proprietary Database