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[191836_at] C.elegans ZYG-11 like protein

Description C48D1.1 /REP_DB=WormBase Gene ID /WP=CE08812 /TR=O02227 /GB=CAB02846.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 like protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 174.9
(2.3)
P 		88.3
(-3)
P 		90.4
(-2.9)
P 		187.2
(3)
P 		99
B 127.3
(-0.5)
P 		124.3
(-0.6)
P 		39.8
(-3)
M 		251.4
(3)
P 		212
C 229.3
(3)
P 		105.5
(-0.8)
P 		35.2
(-3)
P 		207.2
(2.3)
P 		194
avr 177.2
(1.6) 		106
(-1.1) 		55.1
(-3) 		215.3
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 219.6
(3)
P 		201.4
(2.1)
P 		220.1
(3)
P 		210.7
(2.6)
P 		110.5
(-2.1)
P 		91.9
(-3)
P 		128
B 150.4
(1.4)
P 		142.3
(0.7)
P 		171.2
(3)
P 		145.2
(1)
P 		121.5
(-0.9)
P 		94.3
(-3)
P 		77
C 185.9
(1.4)
P 		224.5
(3)
P 		160.8
(0.3)
P 		147.6
(-0.2)
P 		124.6
(-1.2)
P 		81.6
(-3)
P 		143
avr 185.3
(2.8) 		189.4
(3) 		184
(2.7) 		167.8
(1.7) 		118.9
(-1.2) 		89.3
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 63.7
(3)
P 		19.2
(-3)
P 		23.6
(-2.4)
P 		27.4
(-1.9)
P 		45
B 40.6
(1.2)
P 		30.7
(-0.1)
P 		9.2
(-3)
M 		53.6
(3)
P 		44
C 75.9
(3)
P 		30.3
(-1.3)
P 		12.3
(-3)
P 		34.9
(-0.9)
P 		64
avr 60.1
(3) 		26.7
(-1.4) 		15
(-3) 		38.6
(0.1) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 40.5
(-0.8)
P 		71.6
(3)
P 		47.9
(0.1)
P 		53.4
(0.8)
P 		33.4
(-1.7)
P 		22.4
(-3)
P 		49
B 52.3
(3)
P 		47.4
(1.3)
P 		41.6
(-0.8)
P 		38.5
(-1.8)
P 		49.4
(2)
P 		35.2
(-3)
P 		17
C 68.9
(3)
P 		68.5
(2.9)
P 		40.9
(-1)
P 		29.7
(-2.7)
P 		40.3
(-1.1)
P 		27.3
(-3)
P 		42
avr 53.9
(1.5) 		62.5
(3) 		43.5
(-0.3) 		40.5
(-0.9) 		41
(-0.8) 		28.3
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8361
Sequence Type Exemplar sequence
Representative Public ID C48D1.1 NCBI
Target Description C48D1.1 /REP_DB=WormBase Gene ID /WP=CE08812 /TR=O02227 /GB=CAB02846.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070136 NCBI Caenorhabditis elegans C48D1.1 (C48D1.1) mRNA, complete cds. 11/11 None
SNAP00000028974 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13194227:13196023:-1 11/11 None
GENEFINDER00000028988 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13193767:13197351:-1 11/11 None
C48D1.1 ENSEMBL cdna:known chromosome:CEL140:IV:13193636:13197351:-1 gene:C48D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13193911-13197357(-) 100.0 100.0
Public Domain and Genome References
Gene Title C.elegans ZYG-11 like protein
Ensembl C48D1.1
Entrez Gene 178271 Entrez gene
SwissProt O02227 EMBL-EBI
WormBase CE32833 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 0.0
blast CAB03146 Hypothetical protein F58D2.1 [Caenorhabditis elegans] ref|NP_502535.1| F58D2.1 [Caenorhabditis elegans] 1.0E-153
blast CAB03146 Hypothetical protein F58D2.1 [Caenorhabditis elegans] ref|NP_502535.1| F58D2.1 [Caenorhabditis elegans] 1.0E-150
blast CAB03146 Hypothetical protein F58D2.1 [Caenorhabditis elegans] ref|NP_502535.1| F58D2.1 [Caenorhabditis elegans] 1.0E-110
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 3.0E-74
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 5.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.016
Sequence
Target Sequence 
>C. ELEGANS:191836_AT
tattccaaccaactgtgttcaaacggagtgacgttattggttgaagctttaatgagcttc
gtttatttgtacaaaaggatgatttcagaagcatacgtaaaagtcaatatttcctactgg
aatgccgtcgagaaacttgtaaatttgaaattgggaaaactcgattttgataaaataagc
aaaaccgctatgagttttctattagagaatcgagtaagcaaggctcttcgtaccagagca
tcaagtgttttgtgccagtgcatacatagaatgcattctgatgaattaaaatctctatct
gaaaaaactgagaatgtgaatcgattagtcgatatactggaatggagtgtaggacagaaa
aatgaaacgaagctttcggaattttttgaaatcactatcaaaatgactgaaaaaagttca
aaggcttgtaccaacatgatacaagctggaataataagtatttcattgagttgcatggaa
aaggttgagtctaatgatattactacgaaatgcttggagttgttaacaaatctgtcatcc
gctctgaattatgactctttgcaagaactctacacatcatcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCAACCAACTGTGTTCAAACG 87 661 1144 Antisense
GAGTGACGTTATTGGTTGAAGCTTT 67 401 1169 Antisense
AATGAGCTTCGTTTATTTGTACAAA 358 165 1194 Antisense
TTTCCTACTGGAATGCCGTCGAGAA 267 669 1253 Antisense
GAGTAAGCAAGGCTCTTCGTACCAG 375 397 1355 Antisense
TCGTACCAGAGCATCAAGTGTTTTG 632 601 1371 Antisense
AAGTGTTTTGTGCCAGTGCATACAT 685 157 1386 Antisense
AGTTCAAAGGCTTGTACCAACATGA 7 63 1558 Antisense
CAAATCTGTCATCCGCTCTGAATTA 279 193 1670 Antisense
TCCGCTCTGAATTATGACTCTTTGC 106 597 1681 Antisense
GCAAGAACTCTACACATCATCAAAT 80 321 1704 Antisense
Sequence Source Affymetrix Proprietary Database