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[191835_s_at]

Description ZK418.9 /REP_DB=WormBase Gene ID /WP=CE28190 /TR=Q23487 /GB=AAA50693.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=possible RNA binding protein
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 732.3
(0.9)
P 		853
(3)
P 		734.7
(1)
P 		499.9
(-3)
P 		353
B 694.9
(0.5)
P 		770.9
(3)
P 		732.6
(1.8)
P 		585.1
(-3)
P 		186
C 762.6
(1.7)
P 		774.1
(1.9)
P 		840.8
(3)
P 		487.3
(-3)
P 		354
avr 729.9
(1.5) 		799.3
(3) 		769.4
(2.3) 		524.1
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 655.4
(3)
P 		528.7
(0.3)
P 		434.6
(-1.7)
P 		375.4
(-3)
P 		378.5
(-2.9)
P 		450.2
(-1.4)
P 		280
B 696.7
(3)
P 		509.3
(-0.6)
P 		419.7
(-2.3)
P 		384.3
(-3)
P 		505
(-0.7)
P 		461.9
(-1.5)
P 		312
C 804
(3)
P 		496.9
(-1)
P 		435.4
(-1.9)
P 		348.6
(-3)
P 		432.5
(-1.9)
P 		376.4
(-2.6)
P 		455
avr 718.7
(3) 		511.6
(-0.6) 		429.9
(-2) 		369.4
(-3) 		438.7
(-1.8) 		429.5
(-2) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 266.6
(3)
P 		185.2
(0.5)
P 		192.1
(0.7)
P 		73.2
(-3)
P 		193
B 221.6
(3)
P 		190.4
(1.1)
P 		169.8
(-0.2)
P 		124.7
(-3)
P 		97
C 252.4
(1.8)
P 		222.5
(1)
P 		293.1
(3)
P 		82.2
(-3)
P 		211
avr 246.9
(3) 		199.4
(1.1) 		218.3
(1.9) 		93.4
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 120.8
(-1.3)
P 		188
(3)
P 		94.7
(-3)
P 		95.2
(-3)
P 		114.2
(-1.7)
P 		109.6
(-2)
P 		93
B 242.4
(3)
P 		169.5
(-0.1)
P 		101.9
(-3)
P 		101.8
(-3)
P 		205.2
(1.4)
P 		172.3
(0)
P 		141
C 298
(3)
P 		151.6
(-0.9)
P 		110.8
(-1.9)
P 		70.1
(-3)
P 		140
(-1.2)
P 		126
(-1.5)
P 		228
avr 220.4
(3) 		169.7
(0.7) 		102.5
(-2.4) 		89
(-3) 		153.1
(-0.1) 		136
(-0.9) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191835_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6022
Sequence Type Exemplar sequence
Representative Public ID ZK418.9 NCBI
Target Description ZK418.9 /REP_DB=WormBase Gene ID /WP=CE28190 /TR=Q23487 /GB=AAA50693.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=possible RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027830(11), NM_001027829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027830 NCBI Caenorhabditis elegans ZK418.9b (ZK418.9) mRNA, complete cds. 11/11 None
NM_001027829 NCBI Caenorhabditis elegans ZK418.9a (ZK418.9) mRNA, complete cds. 11/11 None
SNAP00000003347 ENSEMBL cdna:SNAP chromosome:CEL140:III:7085314:7089966:-1 11/11 None
GENEFINDER00000003360 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7085314:7090584:-1 11/11 None
ZK418.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:7085125:7087665:-1 gene:ZK418.9 11/11 None
ZK418.9b.3 ENSEMBL cdna:known chromosome:CEL140:III:7085125:7087505:-1 gene:ZK418.9 11/11 None
ZK418.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:7085125:7087139:-1 gene:ZK418.9 11/11 None
ZK418.9b.4 ENSEMBL cdna:known chromosome:CEL140:III:7085126:7087507:-1 gene:ZK418.9 11/11 None
ZK418.9b.5 ENSEMBL cdna:known chromosome:CEL140:III:7085126:7087507:-1 gene:ZK418.9 11/11 None
ZK418.9a ENSEMBL cdna:known chromosome:CEL140:III:7085314:7087613:-1 gene:ZK418.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7085311-7089910(-) 98.18 100.0
Public Domain and Genome References
Ensembl ZK418.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50693 Hypothetical protein ZK418.9a [Caenorhabditis elegans] ref|NP_001023000.1| ZK418.9a [Caenorhabditis elegans] 0.0
blast AAP68924 Hypothetical protein ZK418.9b [Caenorhabditis elegans] ref|NP_001023001.1| ZK418.9b [Caenorhabditis elegans] 0.0
blast CAE70079 Hypothetical protein CBG16520 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 4.8E-11
Pfam IPR004087 EMBL-EBI KH 4.6E-8
Pfam IPR004087 EMBL-EBI KH 2.1E-16
Pfam IPR004087 EMBL-EBI KH 4.4E-14
Pfam IPR004087 EMBL-EBI KH 4.8E-11
Pfam IPR004087 EMBL-EBI KH 4.6E-8
Pfam IPR004087 EMBL-EBI KH 2.1E-16
Pfam IPR004087 EMBL-EBI KH 4.4E-14
Pfam IPR004087 EMBL-EBI KH 4.8E-11
Pfam IPR004087 EMBL-EBI KH 4.6E-8
Pfam IPR004087 EMBL-EBI KH 2.1E-16
Pfam IPR004087 EMBL-EBI KH 4.4E-14
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.4E-32
Pfam IPR004087 EMBL-EBI KH 4.8E-11
Pfam IPR004087 EMBL-EBI KH 4.6E-8
Pfam IPR004087 EMBL-EBI KH 2.1E-16
Pfam IPR004087 EMBL-EBI KH 4.4E-14
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.4E-32
Sequence
Target Sequence 
>C. ELEGANS:191835_S_AT
gaagtcagctccaaattcatcatgcttcacatctcgttagaatcaaggttggagaaattt
ctccgaacactccggttcctccacttcaaggggctggtggtggatatcaacaacagcagg
cgatgttcagtgccggaactcaaaacggaggatatcaaagcacaggaggattcattcaac
agcagcagcaaccacagttccaacatcaacaacaacaatgggctccacaaaatggaggag
gagttcaacaacgtcttccaacagaaatgtatcagaatcctatgcaacaaccacaagcca
gtgtcattccacaagcaagtgctgatcccgcaccagctgtcaatccagcgacaggagctc
ctgattattcagcgcagtgggctgcatattatcgatcgataggtcttgtcgaacaagctg
caatggtagagagtcagatgcgccgtaaccagtccaacactgcacctctcggtgacgtgt
ctggtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCAGCTCCAAATTCATCATGC 300 337 1799 Antisense
TCATCATGCTTCACATCTCGTTAGA 491 619 1815 Antisense
GAGAAATTTCTCCGAACACTCCGGT 300 381 1850 Antisense
ACAGCAGGCGATGTTCAGTGCCGGA 577 107 1911 Antisense
GGAGGATTCATTCAACAGCAGCAGC 619 515 1963 Antisense
ACAACCACAAGCCAGTGTCATTCCA 198 113 2085 Antisense
TCAATCCAGCGACAGGAGCTCCTGA 467 631 2138 Antisense
GGAGCTCCTGATTATTCAGCGCAGT 69 521 2152 Antisense
GCAGTGGGCTGCATATTATCGATCG 571 311 2172 Antisense
GTAGAGAGTCAGATGCGCCGTAACC 690 455 2224 Antisense
CACCTCTCGGTGACGTGTCTGGTGT 607 201 2261 Antisense
Sequence Source Affymetrix Proprietary Database