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[191834_at] UDP-glucuronosyltransferase

Description H10D18.6 /REP_DB=WormBase Gene ID /WP=CE23803 /TR=Q9N5N0 /GB=AAF39878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 90      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-3)
A 		4.9
(-2.1)
A 		3.2
(-2.9)
A 		15
(3)
A 		12
B 2.6
(-3)
A 		8.6
(3)
A 		3.5
(-2.1)
A 		4.4
(-1.2)
A 		6
C 5.6
(1.1)
A 		3.3
(-3)
A 		3.9
(-1.9)
A 		6.7
(3)
A 		3
avr 3.7
(-2.8) 		5.6
(-0.6) 		3.5
(-3) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.1
(1.9)
A 		4.3
(-1.8)
A 		2.7
(-2.8)
A 		11.8
(3)
A 		2.4
(-3)
A 		5.6
(-1)
A 		9
B 5.9
(-0.1)
A 		2.3
(-2.6)
A 		2.6
(-2.4)
A 		10.3
(3)
A 		4.6
(-1)
A 		1.8
(-3)
A 		9
C 3.2
(-2.6)
A 		2.5
(-3)
A 		3.5
(-2.4)
A 		2.7
(-2.9)
A 		3.7
(-2.3)
A 		12.4
(3)
A 		10
avr 6.4
(0.9) 		3
(-2.9) 		2.9
(-3) 		8.3
(3) 		3.6
(-2.2) 		6.6
(1.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.1
(-1.7)
A 		1.1
(-1.7)
A 		0.8
(-3)
A 		2.2
(3)
A 		1
B 0.8
(-3)
A 		2.1
(3)
A 		0.8
(-3)
A 		0.9
(-2.5)
A 		1
C 1.8
(3)
A 		0.9
(-3)
A 		1.4
(0.3)
A 		1.1
(-1.7)
A 		1
avr 1.2
(0) 		1.4
(3) 		1
(-3) 		1.4
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.9
(0.3)
A 		1.5
(-0.8)
A 		0.6
(-3)
A 		3
(3)
A 		0.7
(-2.8)
A 		1.4
(-1)
A 		2
B 2.1
(1.3)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		2.7
(3)
A 		1.9
(0.7)
A 		0.7
(-2.7)
A 		2
C 1.2
(-1.9)
A 		0.8
(-2.5)
A 		0.9
(-2.4)
A 		0.5
(-3)
A 		1.2
(-1.9)
A 		4.2
(3)
A 		4
avr 1.7
(1.3) 		1
(-1.7) 		0.7
(-3) 		2.1
(3) 		1.3
(-0.4) 		2.1
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15542
Sequence Type Exemplar sequence
Representative Public ID H10D18.6 NCBI
Target Description H10D18.6 /REP_DB=WormBase Gene ID /WP=CE23803 /TR=Q9N5N0 /GB=AAF39878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071658 NCBI Caenorhabditis elegans H10D18.6 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
H10D18.6 ENSEMBL cdna:known chromosome:CEL140:V:3838557:3840651:-1 gene:H10D18.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3838556-3841344(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Ensembl H10D18.6
Entrez Gene 186717 Entrez gene
SwissProt Q9N5N0 EMBL-EBI
WormBase CE36870 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39878 Hypothetical protein H10D18.6 [Caenorhabditis elegans] ref|NP_504059.2| H10D18.6 [Caenorhabditis elegans] 0.0
blast AAB52270 Udp-glucuronosyltransferase protein 32 [Caenorhabditis elegans] ref|NP_504060.2| F47C10.6 [Caenorhabditis elegans] 1.0E-160
blast CAE71586 Hypothetical protein CBG18543 [Caenorhabditis briggsae] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.7E-10
Sequence
Target Sequence 
>C. ELEGANS:191834_AT
cgctttcctgacgcatggtggattgggtagcacaaatgaagctgcgttcctcgggaaacc
aagtataatgttcccaatttggtccgaccaaactcgcaacagcaacatgttgggtcgcca
gggaatgtcgatagttctacacaaaagtgatcttggaaacttccagaaaatccgtgatgc
tttccatgaaattcttcacgacgaaaactatcgtttgaatgctaataaagtggccggcat
ggtcagaaatcaaccagccaatccaaaagatgtgtttgtaaagcatgtggagtttgtggg
aaaatacggccctcttcatcatatgactccgtacagcttgaaaatgtcatcgtttcaaag
atataattatgatatttatgtatacaagtcaatgagctatgttattcctggtgctttggt
ctggcagtctttggaagttcattcatcgtgtcgccgttttttttttcagttttacctttg
gtgtgctggagttctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTTCCTGACGCATGGTGGATTG 401 255 990 Antisense
AGCTGCGTTCCTCGGGAAACCAAGT 128 79 1029 Antisense
TAATGTTCCCAATTTGGTCCGACCA 684 103 1055 Antisense
GACCAAACTCGCAACAGCAACATGT 20 383 1075 Antisense
GCAACATGTTGGGTCGCCAGGGAAT 638 319 1091 Antisense
GTGGCCGGCATGGTCAGAAATCAAC 487 491 1219 Antisense
TTGTGGGAAAATACGGCCCTCTTCA 619 707 1283 Antisense
TGTTATTCCTGGTGCTTTGGTCTGG 474 557 1389 Antisense
TTGGTCTGGCAGTCTTTGGAAGTTC 676 707 1405 Antisense
TTGGAAGTTCATTCATCGTGTCGCC 438 709 1420 Antisense
ACCTTTGGTGTGCTGGAGTTCTCAT 568 87 1463 Antisense
Sequence Source Affymetrix Proprietary Database