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[191833_s_at] translocon-associated protein

Description K08F4.3 /REP_DB=WormBase Gene ID /WP=CE06151 /TR=Q21352 /GB=CAA93083.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=translocon-associated protein
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 17      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 142.7
(-3)
P 		219.6
(-0.7)
P 		213.8
(-0.9)
P 		346.5
(3)
P 		204
B 137.5
(-3)
P 		234.3
(0.7)
P 		184
(-1.2)
P 		293.3
(3)
P 		156
C 125.5
(-3)
P 		209.4
(-0.8)
P 		205.1
(-0.9)
P 		357.1
(3)
P 		232
avr 135.2
(-3) 		221.1
(-0.4) 		201
(-1) 		332.3
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1035
1 2 3 4 5 6 range
A 127.4
(-3)
P 		136.3
(-2.9)
P 		287.3
(-1.9)
P 		395.6
(-1.1)
P 		729.2
(1.3)
P 		966.1
(3)
P 		839
B 164.8
(-2.9)
P 		145.9
(-3)
P 		283.3
(-2.2)
P 		514.9
(-0.8)
P 		723.9
(0.4)
P 		1162.7
(3)
P 		1017
C 136.6
(-3)
P 		221.5
(-2.4)
P 		207
(-2.5)
P 		459.9
(-0.8)
P 		738.4
(1.1)
P 		1025.2
(3)
P 		889
avr 142.9
(-3) 		167.9
(-2.8) 		259.2
(-2.2) 		456.8
(-0.9) 		730.5
(0.9) 		1051.3
(3) 		908
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 52
(0.1)
P 		47.7
(-3)
P 		55.9
(3)
P 		50.7
(-0.8)
P 		8
B 43.9
(-2.6)
P 		57.9
(1.6)
P 		42.6
(-3)
P 		62.5
(3)
P 		20
C 41.5
(-3)
P 		60.2
(0.7)
P 		71.5
(3)
P 		60.2
(0.7)
P 		30
avr 45.8
(-3) 		55.3
(1.8) 		56.7
(2.5) 		57.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 23.5
(-3)
P 		48.5
(-2.3)
P 		62.6
(-1.9)
P 		100.3
(-0.8)
P 		220
(2.6)
P 		235.2
(3)
P 		212
B 57.3
(-2.9)
P 		48.6
(-3)
P 		68.8
(-2.7)
P 		136.4
(-1.6)
P 		294.1
(0.8)
P 		433.5
(3)
P 		385
C 50.6
(-3)
P 		67.6
(-2.7)
P 		52.7
(-3)
P 		92.5
(-2.1)
P 		238.9
(0.9)
P 		343.2
(3)
P 		293
avr 43.8
(-3) 		54.9
(-2.8) 		61.4
(-2.6) 		109.7
(-1.7) 		251
(1.2) 		337.3
(3) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191833_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9013
Sequence Type Exemplar sequence
Representative Public ID K08F4.3 NCBI
Target Description K08F4.3 /REP_DB=WormBase Gene ID /WP=CE06151 /TR=Q21352 /GB=CAA93083.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=translocon-associated protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069442 NCBI Caenorhabditis elegans K08F4.3 (K08F4.3) mRNA, complete cds. 11/11 None
SNAP00000005856 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10129365:10130105:1 11/11 None
GENEFINDER00000005875 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10129365:10130105:1 11/11 None
K08F4.3 ENSEMBL cdna:known chromosome:CEL140:IV:10129365:10130154:1 gene:K08F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10129370-10130111(+) 100.0 100.0
Public Domain and Genome References
Gene Title translocon-associated protein
Ensembl K08F4.3
Entrez Gene 177881 Entrez gene
SwissProt Q21352 EMBL-EBI
WormBase CE06151 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93083 Hypothetical protein K08F4.3 [Caenorhabditis elegans] ref|NP_501843.1| K08F4.3 [Caenorhabditis elegans] 1.0E-89
blast CAE59929 Hypothetical protein CBG03415 [Caenorhabditis briggsae] 1.0E-44
blast NP_508150 T04G9.5 [Caenorhabditis elegans] gb|AAA82458.1| Hypothetical protein T04G9.5 [Caenorhabditis elegans] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR008856 EMBL-EBI Translocon-associated beta 5.0E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501843.1 1 149-171
K08F4.3 1 149-171
SNAP00000005856 1 149-171
GENEFINDER00000005875 1 149-171
Sequence
Target Sequence 
>C. ELEGANS:191833_S_AT
tgcaactggttttcctgattctctctgctcttgcagctgctgatgcttctgcgaaaattc
ttatcggcaaatccttcgtgaccaagtatccggttgcacaaagagaaaacgcatttgaat
atcagattatcaacattggcctttctccagctctcaaggtcgagctgtctgatctcaaat
ctttcccaactgaccgattcgagattttgaaaggatctgcaacagcaagttttcccgtca
ttcctgcgaattccaccatctaccatcacattgttgtcattcctcgtgttcctcaagcca
tcgaagatcacgatgttaccgtgaactatactgattccgagactggcaaacgtgcgcgaa
cctctacagtctcgtatgataagagaggatacactcatttcttcgccgaaactgccatga
gaaaagtggaaggagtcaattgcacacacttcctcggattcggagccatcgcttttccat
tgactgcaatcccagcaattctctactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAACTGGTTTTCCTGATTCTCTC 459 577 14 Antisense
CTGCTCTTGCAGCTGCTGATGCTTC 16 239 38 Antisense
TTATCGGCAAATCCTTCGTGACCAA 37 671 74 Antisense
TTATCAACATTGGCCTTTCTCCAGC 35 681 140 Antisense
AGCTGTCTGATCTCAAATCTTTCCC 606 79 176 Antisense
TCTTTCCCAACTGACCGATTCGAGA 4 613 193 Antisense
CACCATCTACCATCACATTGTTGTC 297 201 267 Antisense
GATTCCGAGACTGGCAAACGTGCGC 274 433 346 Antisense
GCGAACCTCTACAGTCTCGTATGAT 501 287 369 Antisense
ATCGCTTTTCCATTGACTGCAATCC 578 37 481 Antisense
CTGCAATCCCAGCAATTCTCTACTG 353 237 497 Antisense
Sequence Source Affymetrix Proprietary Database