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[191832_at]

Description VW06B3R.1 /REP_DB=WormBase Gene ID /WP=CE20123 /CHR=X /FEA=Sanger Annotation /DEF=Insulinase (proteinase M16) (HINXTON) TR:Q9TVZ6 protein_id:CAB54320.1
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 05      6grp_total > 32      4grp_total > 09      6grp_highest_sub > De      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3246
1 2 3 4 range
A 7543.3
(-2.9)
P 		7858.9
(-1.8)
P 		7510.9
(-3)
P 		9271.6
(3)
P 		1761
B 6025.8
(-3)
P 		6727.8
(-1.5)
P 		7240.7
(-0.4)
P 		8862.8
(3)
P 		2837
C 7101.1
(-0.2)
P 		6823
(-1.5)
P 		6506.7
(-3)
P 		7766.6
(3)
P 		1260
avr 6890.1
(-3) 		7136.6
(-2.2) 		7086.1
(-2.3) 		8633.7
(3) 		1744

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4957
1 2 3 4 5 6 range
A 8034.6
(3)
P 		7521
(1.9)
P 		6400.6
(-0.6)
P 		7336.7
(1.5)
P 		5996.1
(-1.5)
P 		5311.1
(-3)
P 		2724
B 6901.6
(1.7)
P 		6490.4
(1)
P 		7650.9
(3)
P 		6970
(1.8)
P 		5938.8
(-0)
P 		4249
(-3)
P 		3402
C 7327.7
(1.6)
P 		6620.5
(0.7)
P 		8523.7
(3)
P 		7426.6
(1.7)
P 		7804.1
(2.1)
P 		3567
(-3)
P 		4957
avr 7421.3
(2.8) 		6877.3
(1.8) 		7525.1
(3) 		7244.4
(2.5) 		6579.7
(1.2) 		4375.7
(-3) 		3149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1437
1 2 3 4 range
A 2746.5
(3)
P 		1706
(-1.5)
P 		1963.5
(-0.4)
P 		1357.2
(-3)
P 		1389
B 1921.6
(3)
P 		1661.6
(-3)
P 		1677.8
(-2.6)
P 		1888.7
(2.2)
P 		260
C 2350.7
(3)
P 		1961.7
(0.8)
P 		2267.8
(2.5)
P 		1309.6
(-3)
P 		1041
avr 2339.6
(3) 		1776.4
(-1.1) 		1969.7
(0.3) 		1518.5
(-3) 		821

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1522
1 2 3 4 5 6 range
A 1481.1
(-2.2)
P 		2674.8
(3)
P 		1393.9
(-2.6)
P 		1860.7
(-0.5)
P 		1809.4
(-0.8)
P 		1293.1
(-3)
P 		1382
B 2401.4
(2.9)
P 		2160.4
(1.2)
P 		1857.9
(-1)
P 		1846.1
(-1.1)
P 		2412.8
(3)
P 		1584.5
(-3)
P 		828
C 2716.1
(3)
P 		2020.1
(0.3)
P 		2169.4
(0.8)
P 		1493.5
(-1.8)
P 		2525.3
(2.2)
P 		1194.1
(-3)
P 		1522
avr 2199.5
(2.4) 		2285.1
(3) 		1807.1
(-0.1) 		1733.4
(-0.6) 		2249.2
(2.8) 		1357.2
(-3) 		928
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16050
Sequence Type Exemplar sequence
Representative Public ID VW06B3R.1 NCBI
Target Description VW06B3R.1 /REP_DB=WormBase Gene ID /WP=CE20123 /CHR=X /FEA=Sanger Annotation /DEF=Insulinase (proteinase M16) (HINXTON) TR:Q9TVZ6 protein_id:CAB54320.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077610(11), NM_077611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077610 NCBI Caenorhabditis elegans VW06B3R.1a (VW06B3R.1) mRNA, complete cds. 11/11 None
NM_077611 NCBI Caenorhabditis elegans VW06B3R.1b (VW06B3R.1) mRNA, complete cds. 11/11 None
SNAP00000037170 ENSEMBL cdna:SNAP chromosome:CEL140:X:12020007:12020980:1 10/11 None
VW06B3R.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:12018348:12021133:1 gene:VW06B3R.1 11/11 None
VW06B3R.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:12018350:12021133:1 gene:VW06B3R.1 11/11 None
VW06B3R.1b ENSEMBL cdna:known chromosome:CEL140:X:12018350:12020980:1 gene:VW06B3R.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12018359-12020980(+) 100.0 100.0
Public Domain and Genome References
Ensembl VW06B3R.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54182 Hypothetical protein VW06B3R.1a [Caenorhabditis elegans] emb|CAB54320.1| Hypothetical protein VW06B3R.1a [Caenorhabditis elegans] ref|NP_510011.1| VW06B3R.1a [Caenorhabditis elegans] 0.0
blast CAD56227 Hypothetical protein VW06B3R.1b [Caenorhabditis elegans] emb|CAC35829.2| Hypothetical protein VW06B3R.1b [Caenorhabditis elegans] ref|NP_510012.2| VW06B3R.1b [Caenorhabditis elegans] 0.0
blast CAE69864 Hypothetical protein CBG16195 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 9.5E-21
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 9.5E-21
Pfam IPR007863 EMBL-EBI Peptidase M16, C-terminal 2.5E-11
Sequence
Target Sequence 
>C. ELEGANS:191832_AT
aacgtcgatcatgacactctggtccaggccggaagcacacaattcccactggcccagaac
cagcccgccaaggctaccccagctaaatattttggaggagaagcccgcaaggatggtcgt
ggaaatcgctcatacgttgccattgccggagaaggatccgccatcacatctgtcaaggat
gttgctgtccaagccgtagtcgcccagattcttctgaacgccgctcaaaaagtcacatca
gaggctatttccgtaaatgtcaactaccaggattccggactcgtcggagttcaattcgct
gcctgcaacacacagattactcaagtcaccaagtctattgcctctgccatcaagtctgca
aaagccgatggtcttgacaacgccaagaacacggcggccgttcaagttctttccgacgct
caacacgcatctgaagtcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTCGATCATGACACTCTGGTCC 121 145 628 Antisense
GAGAAGCCCGCAAGGATGGTCGTGG 12 393 725 Antisense
TCATACGTTGCCATTGCCGGAGAAG 16 619 757 Antisense
GTAGTCGCCCAGATTCTTCTGAACG 652 455 823 Antisense
GAACGCCGCTCAAAAAGTCACATCA 379 347 843 Antisense
CAACTACCAGGATTCCGGACTCGTC 704 187 888 Antisense
TTCGCTGCCTGCAACACACAGATTA 190 697 922 Antisense
CAAGTCACCAAGTCTATTGCCTCTG 229 185 949 Antisense
TTGCCTCTGCCATCAAGTCTGCAAA 149 703 965 Antisense
AAGCCGATGGTCTTGACAACGCCAA 218 149 989 Antisense
CGCTCAACACGCATCTGAAGTCGCA 338 255 1044 Antisense
Sequence Source Affymetrix Proprietary Database