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[191831_s_at]

Description C47E12.4 /REP_DB=WormBase Gene ID /WP=CE23601 /TR=SW:Q18680 /GB=CAA93107.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=inorganic pyrophosphatase
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 05      6grp_total > 32      4grp_total > 63      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2822
1 2 3 4 range
A 7113.2
(3)
P 		5225.4
(-1.3)
P 		6201.6
(0.9)
P 		4508.4
(-3)
P 		2605
B 6855
(3)
P 		4720.6
(-2.4)
P 		5759.4
(0.3)
P 		4463.4
(-3)
P 		2392
C 6277.8
(3)
P 		5468
(0.6)
P 		5939.5
(2)
P 		4290.8
(-3)
P 		1987
avr 6748.7
(3) 		5138
(-1.2) 		5966.8
(1) 		4420.9
(-3) 		2328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3656
1 2 3 4 5 6 range
A 5887.7
(-1.4)
P 		7686.2
(3)
P 		7491.9
(2.5)
P 		7525.3
(2.6)
P 		6175.2
(-0.7)
P 		5250.2
(-3)
P 		2436
B 7543.7
(3)
P 		7338
(2.5)
P 		5949
(-0.6)
P 		6808.1
(1.4)
P 		6481.4
(0.6)
P 		4866
(-3)
P 		2678
C 7308.1
(2.5)
P 		6839.2
(1.8)
P 		7575.2
(3)
P 		5826.5
(0)
P 		7368.4
(2.6)
P 		4030.5
(-3)
P 		3545
avr 6913.2
(2.1) 		7287.8
(3) 		7005.4
(2.3) 		6720
(1.7) 		6675
(1.6) 		4715.6
(-3) 		2572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1930
1 2 3 4 range
A 2589.9
(3)
P 		1134.3
(-1.5)
P 		1621.2
(-0)
P 		659.9
(-3)
P 		1930
B 2186
(3)
P 		1165.9
(-2)
P 		1334.6
(-1.1)
P 		951.1
(-3)
P 		1235
C 2078.1
(3)
P 		1572.1
(0.8)
P 		2070.1
(3)
P 		723.5
(-3)
P 		1355
avr 2284.7
(3) 		1290.8
(-1) 		1675.3
(0.6) 		778.2
(-3) 		1507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1648
1 2 3 4 5 6 range
A 1085.4
(-3)
P 		2733.6
(3)
P 		1631.6
(-1)
P 		1908.6
(-0)
P 		1863.4
(-0.2)
P 		1278.3
(-2.3)
P 		1648
B 2624.8
(3)
P 		2442.5
(2)
P 		1444.6
(-3)
P 		1803.2
(-1.2)
P 		2633.3
(3)
P 		1814.5
(-1.1)
P 		1189
C 2708.8
(3)
P 		2086.8
(0.6)
P 		1928
(-0)
P 		1171.7
(-3)
P 		2384.3
(1.7)
P 		1349.2
(-2.3)
P 		1537
avr 2139.7
(1.2) 		2421
(3) 		1668.1
(-1.8) 		1627.8
(-2.1) 		2293.7
(2.2) 		1480.7
(-3) 		940
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191831_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10065
Sequence Type Exemplar sequence
Representative Public ID C47E12.4 NCBI
Target Description C47E12.4 /REP_DB=WormBase Gene ID /WP=CE23601 /TR=SW:Q18680 /GB=CAA93107.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=inorganic pyrophosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027902(11), NM_001027904(11), NM_001027903(11), NM_001027905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027902 NCBI Caenorhabditis elegans C47E12.4a (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027904 NCBI Caenorhabditis elegans C47E12.4c (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027903 NCBI Caenorhabditis elegans C47E12.4b (C47E12.4) mRNA, complete cds. 11/11 None
NM_001027905 NCBI Caenorhabditis elegans C47E12.4d (C47E12.4) mRNA, complete cds. 11/11 None
SNAP00000021569 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9995696:9996717:-1 11/11 None
GENEFINDER00000021590 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9995696:10001537:-1 11/11 None
C47E12.4a ENSEMBL cdna:known chromosome:CEL140:IV:9995436:9998897:-1 gene:C47E12.4 11/11 None
C47E12.4d.2 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997565:-1 gene:C47E12.4 11/11 None
C47E12.4c.2 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997955:-1 gene:C47E12.4 11/11 A 
C47E12.4c.1 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9998871:-1 gene:C47E12.4 11/11 A 
C47E12.4b ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997872:-1 gene:C47E12.4 11/11 A 
C47E12.4d.1 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9996763:-1 gene:C47E12.4 11/11 None
C47E12.4c.3 ENSEMBL cdna:known chromosome:CEL140:IV:9995696:9997935:-1 gene:C47E12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9995701-9997664(-) 100.0 100.0
Public Domain and Genome References
Ensembl C47E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89728 Hypothetical protein C47E12.4a [Caenorhabditis elegans] ref|NP_001023073.1| C47E12.4a [Caenorhabditis elegans] 0.0
blast CAA93107 Hypothetical protein C47E12.4c [Caenorhabditis elegans] ref|NP_001023075.1| C47E12.4c [Caenorhabditis elegans] 0.0
blast CAD89726 Hypothetical protein C47E12.4b [Caenorhabditis elegans] ref|NP_001023074.1| C47E12.4b [Caenorhabditis elegans] sp|Q18680|IPYR_CAEEL Probable inorganic pyrophosphatase (Pyrophosphate phospho-hydrolase) (PPase) 0.0
blast CAE59951 Hypothetical protein CBG03439 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR008162 EMBL-EBI Inorganic pyrophosphatase 1.2E-102
Pfam IPR001382 EMBL-EBI Glycoside hydrolase, family 47 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023073.1 1 13-30
C47E12.4a 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:191831_S_AT
tgtagctcgctttgttcacaacattttcccacacaaaggatacatctggaactacggagc
tcttccacagacatgggaagatccaaaccatgttgttcctgacactggagctaaaggaga
caatgatccaattgatgttattgaagttggatcaaaggttgccggacggggagctgttct
gcaagtaaaagttctcggaacattggctctcattgacgaaggagagaccgattggaaatt
ggtcgcaattgatgtcaacgatgagaatgctgacaagttgaatgacattgatgacgtcga
aaaggtttatcctggactattggctgcatctgttgaatggttccgcaattacaagattcc
agcaggaaaaccagccaacgagttcgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAGCTCGCTTTGTTCACAACATT 494 559 438 Antisense
TTCACAACATTTTCCCACACAAAGG 141 685 452 Antisense
GATACATCTGGAACTACGGAGCTCT 66 423 476 Antisense
CGGAGCTCTTCCACAGACATGGGAA 175 243 492 Antisense
AGATCCAAACCATGTTGTTCCTGAC 334 65 516 Antisense
GTTGTTCCTGACACTGGAGCTAAAG 99 439 529 Antisense
GTTGGATCAAAGGTTGCCGGACGGG 574 435 583 Antisense
GACGGGGAGCTGTTCTGCAAGTAAA 530 377 602 Antisense
TTCTCGGAACATTGGCTCTCATTGA 139 693 629 Antisense
GTTGAATGGTTCCGCAATTACAAGA 55 423 769 Antisense
GAAAACCAGCCAACGAGTTCGCTTT 111 353 803 Antisense
Sequence Source Affymetrix Proprietary Database