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[191830_at] RAS-related proteins (weak)

Description C52B11.5 /REP_DB=WormBase Gene ID /WP=CE04261 /TR=Q18773 /GB=AAA82469.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=RAS-related proteins (weak)
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 66      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 76.9
(-1.6)
P 		58.9
(-3)
P 		84.8
(-1)
P 		135.5
(3)
P 		77
B 88.7
(-0.2)
P 		75.4
(-1.4)
P 		58.4
(-3)
P 		123.3
(3)
P 		65
C 71.6
(-3)
P 		126
(3)
P 		79.2
(-2.2)
P 		125.1
(2.9)
P 		54
avr 79.1
(-2.4) 		86.8
(-1.6) 		74.1
(-3) 		128
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 98.9
(-1.3)
P 		124.8
(0.9)
P 		93.7
(-1.8)
P 		113.7
(-0)
P 		79.2
(-3)
P 		149.3
(3)
P 		70
B 104.6
(0.2)
P 		56.9
(-3)
P 		111.9
(0.7)
P 		98.5
(-0.2)
P 		95.6
(-0.4)
P 		146.6
(3)
P 		90
C 89.8
(-2.6)
P 		121.9
(1.4)
P 		120.9
(1.2)
P 		99.6
(-1.4)
P 		86.2
(-3)
P 		135.2
(3)
P 		49
avr 97.8
(-1.9) 		101.2
(-1.5) 		108.8
(-0.7) 		103.9
(-1.2) 		87
(-3) 		143.7
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 28
(3)
P 		12.8
(-3)
P 		22.2
(0.7)
P 		19.8
(-0.2)
P 		15
B 28.3
(3)
P 		18.6
(-0.9)
P 		13.5
(-3)
P 		26.3
(2.2)
P 		15
C 23.7
(-2)
P 		36.2
(3)
P 		27.6
(-0.4)
P 		21.1
(-3)
P 		15
avr 26.7
(3) 		22.5
(-1.5) 		21.1
(-3) 		22.4
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 18.2
(-3)
P 		44.4
(3)
P 		20.4
(-2.5)
P 		28.8
(-0.6)
P 		23.9
(-1.7)
P 		36.3
(1.1)
P 		26
B 36.4
(-0.1)
P 		18.9
(-3)
P 		27.2
(-1.6)
P 		26.1
(-1.8)
P 		38.8
(0.3)
P 		54.7
(3)
P 		36
C 33.3
(0.2)
P 		37.2
(1.1)
P 		30.8
(-0.4)
P 		20
(-3)
P 		27.9
(-1.1)
P 		45.3
(3)
P 		25
avr 29.3
(-1.7) 		33.5
(-0.5) 		26.1
(-2.7) 		25
(-3) 		30.2
(-1.5) 		45.4
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18357
Sequence Type Exemplar sequence
Representative Public ID C52B11.5 NCBI
Target Description C52B11.5 /REP_DB=WormBase Gene ID /WP=CE04261 /TR=Q18773 /GB=AAA82469.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=RAS-related proteins (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075835 NCBI Caenorhabditis elegans C52B11.5 (C52B11.5) mRNA, complete cds. 11/11 None
SNAP00000006098 ENSEMBL cdna:SNAP chromosome:CEL140:X:1272880:1275112:1 11/11 None
GENEFINDER00000006106 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1272880:1275112:1 11/11 None
C52B11.5 ENSEMBL cdna:known chromosome:CEL140:X:1272856:1275112:1 gene:C52B11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1272855-1275112(+) 100.0 100.0
Public Domain and Genome References
Gene Title RAS-related proteins (weak)
Ensembl C52B11.5
Entrez Gene 183717 Entrez gene
SwissProt Q18773 EMBL-EBI
WormBase CE04261 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82469 Hypothetical protein C52B11.5 [Caenorhabditis elegans] ref|NP_508236.1| C52B11.5 [Caenorhabditis elegans] 1.0E-133
blast AAA82469 Hypothetical protein C52B11.5 [Caenorhabditis elegans] ref|NP_508236.1| C52B11.5 [Caenorhabditis elegans] 1.0E-128
blast CAE63567 Hypothetical protein CBG08054 [Caenorhabditis briggsae] 2.0E-83
blast CAE63567 Hypothetical protein CBG08054 [Caenorhabditis briggsae] 2.0E-79
blast CAI44561 rab_A45 [Paramecium tetraurelia] 9.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-11
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-11
Sequence
Target Sequence 
>C. ELEGANS:191830_AT
gagagacgtggatgcagttttattattttacgcggctgatgacctggaatcttttaagca
gctcaaggagaacctggtacatgttcagaggaagatcccacccaacgcaaatatcacagt
agtcggaacaaaagctgacgtcaaagagatgcaggtgcagtggcaggaagttgatagttt
tgctgagaatcagggtttttcttgttttgagacaagctcaaaaactggggtgaacgtgga
aataatactgcatgacattctggagaccatttttgaacgtagatttgcaagtgatgatga
tgaagttttgagcaatcaacctgtctacgcctccacggttctaacgagcaggcaagaaga
accaccacgtgttaatgggtactgctggatgccgaatattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGACGTGGATGCAGTTTTATTA 150 395 297 Antisense
ATTTTACGCGGCTGATGACCTGGAA 19 15 321 Antisense
GACCTGGAATCTTTTAAGCAGCTCA 360 383 337 Antisense
TCCCACCCAACGCAAATATCACAGT 393 597 392 Antisense
GAATCAGGGTTTTTCTTGTTTTGAG 426 327 483 Antisense
GGAGACCATTTTTGAACGTAGATTT 348 519 558 Antisense
TTTGAGCAATCAACCTGTCTACGCC 189 667 603 Antisense
GCCTCCACGGTTCTAACGAGCAGGC 710 279 625 Antisense
GCAGGCAAGAAGAACCACCACGTGT 116 311 644 Antisense
ACCACCACGTGTTAATGGGTACTGC 107 87 657 Antisense
GGGTACTGCTGGATGCCGAATATTC 460 497 673 Antisense
Sequence Source Affymetrix Proprietary Database