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[191829_at] retinal-binding like protein

Description F18A11.2 /REP_DB=WormBase Gene ID /WP=CE09452 /TR=O01324 /GB=CAB04135.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=retinal-binding like protein
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 107.4
(-3)
P 		256.3
(2.2)
P 		278.7
(3)
P 		112.9
(-2.8)
P 		171
B 141.6
(-0.9)
P 		259.2
(2.9)
P 		262.3
(3)
P 		78.8
(-3)
P 		184
C 116.5
(-3)
P 		173.1
(-0.8)
P 		270.8
(3)
P 		123
(-2.7)
P 		154
avr 121.8
(-2.4) 		229.5
(1.5) 		270.6
(3) 		104.9
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 189.5
(-0.7)
P 		209.4
(-0.1)
P 		317.6
(3)
P 		228.6
(0.5)
P 		152.7
(-1.7)
P 		107.6
(-3)
P 		210
B 244.3
(0.6)
P 		285.5
(2)
P 		316.3
(3)
P 		263.6
(1.2)
P 		147.6
(-2.7)
P 		138.4
(-3)
P 		178
C 161.9
(-1.4)
P 		274.8
(1.7)
P 		303.5
(2.5)
P 		321.8
(3)
P 		108.5
(-2.8)
P 		101.8
(-3)
P 		220
avr 198.6
(-0.5) 		256.6
(1.3) 		312.5
(3) 		271.3
(1.7) 		136.3
(-2.4) 		115.9
(-3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 39.1
(-0.6)
P 		55.6
(1.2)
P 		72.9
(3)
P 		16.5
(-3)
P 		56
B 45.2
(0.6)
P 		64
(3)
P 		60.8
(2.6)
P 		16.8
(-3)
P 		47
C 38.6
(-1.5)
P 		49.8
(-0.6)
P 		94.4
(3)
P 		20.7
(-3)
P 		74
avr 41
(-0.6) 		56.5
(1) 		76
(3) 		18
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 34.9
(-1.9)
P 		74.5
(3)
P 		69.2
(2.3)
P 		58
(1)
P 		46.1
(-0.5)
P 		26.2
(-3)
P 		48
B 85
(1.6)
P 		95
(3)
P 		76.8
(0.5)
P 		69.8
(-0.5)
P 		60
(-1.8)
P 		51.6
(-3)
P 		43
C 60
(0.1)
P 		83.9
(3)
P 		77.2
(2.2)
P 		64.7
(0.7)
P 		35.1
(-2.9)
P 		34.1
(-3)
P 		50
avr 60
(-0.1) 		84.5
(3) 		74.4
(1.7) 		64.2
(0.4) 		47.1
(-1.8) 		37.3
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3228
Sequence Type Exemplar sequence
Representative Public ID F18A11.2 NCBI
Target Description F18A11.2 /REP_DB=WormBase Gene ID /WP=CE09452 /TR=O01324 /GB=CAB04135.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=retinal-binding like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064370 NCBI Caenorhabditis elegans F18A11.2 (F18A11.2) mRNA, complete cds. 11/11 None
SNAP00000029951 ENSEMBL cdna:SNAP chromosome:CEL140:II:13032749:13035368:1 9/11 None
GENEFINDER00000029957 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13033837:13035704:1 9/11 None
F18A11.2 ENSEMBL cdna:known chromosome:CEL140:II:13032749:13036319:1 gene:F18A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13032745-13036316(+) 100.0 100.0
Public Domain and Genome References
Gene Title retinal-binding like protein
Ensembl F18A11.2
Entrez Gene 174945 Entrez gene
SwissProt O01324 EMBL-EBI
WormBase CE09452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04135 Hypothetical protein F18A11.2 [Caenorhabditis elegans] ref|NP_496771.1| F18A11.2 [Caenorhabditis elegans] 0.0
blast CAE59428 Hypothetical protein CBG02800 [Caenorhabditis briggsae] 0.0
blast CAB04135 Hypothetical protein F18A11.2 [Caenorhabditis elegans] ref|NP_496771.1| F18A11.2 [Caenorhabditis elegans] 1.0E-167
blast CAE59428 Hypothetical protein CBG02800 [Caenorhabditis briggsae] 1.0E-163
blast CAE59428 Hypothetical protein CBG02800 [Caenorhabditis briggsae] 1.0E-147
blast CAE59210 Hypothetical protein CBG02523 [Caenorhabditis briggsae] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.6E-14
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.6E-14
Sequence
Target Sequence 
>C. ELEGANS:191829_AT
taatcgtcaatgctccgtcatttgtgaatgtgctccatcaagcctgctctccatttctac
cagaagactataaggagaaaattgtgattacatctgagccagcgatcggtgcgattcaaa
agcacgctgataaatgtttccttccttctgatctaggaggagatcttgaaaaaaccactt
ccctcccgatggcaccctttcccaaaatgaataaaaaatatgagaaggaaaaagaaaaag
tgagcctattggcgattagtgttccagctgggaagtatacagttcaaaagttttcatgga
aaaagggagatgaggtcgagttctttttgcacaatgagagctctttccattattttatgt
tccattcggaggaagatacgaaagacatggacctttggcgggaaatgaccgttggatgcg
aacgccccgcgttgtctcaaattgattcttggaagtatacagtgccaattgacggcttct
acttcattcgctacggcaaccacaattcctggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCGTCAATGCTCCGTCATTTGT 40 635 575 Antisense
TGTGAATGTGCTCCATCAAGCCTGC 88 555 597 Antisense
TGCTCTCCATTTCTACCAGAAGACT 50 581 619 Antisense
CTGAGCCAGCGATCGGTGCGATTCA 199 237 668 Antisense
GCACGCTGATAAATGTTTCCTTCCT 235 315 696 Antisense
GTTTCCTTCCTTCTGATCTAGGAGG 163 447 710 Antisense
GATGGCACCCTTTCCCAAAATGAAT 187 407 762 Antisense
ATTGGCGATTAGTGTTCCAGCTGGG 508 3 822 Antisense
CCCCGCGTTGTCTCAAATTGATTCT 293 259 999 Antisense
CAATTGACGGCTTCTACTTCATTCG 7 181 1040 Antisense
GCTACGGCAACCACAATTCCTGGTA 42 299 1064 Antisense
Sequence Source Affymetrix Proprietary Database