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[191826_s_at]

Description C31E10.8 /REP_DB=WormBase Gene ID /WP=CE08508 /TR=Q93316 /GB=CAB01733.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=S.pombe protein C4G8.04 like
Cluster 6grp_total > 78      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 54.6
(-2.1)
P 		39
(-3)
A 		39.7
(-3)
A 		141.4
(3)
P 		102
B 68.4
(-0)
A 		24.5
(-2.2)
A 		8.4
(-3)
A 		128.7
(3)
P 		120
C 67.8
(-1)
P 		6.8
(-3)
A 		25.5
(-2.4)
A 		191.3
(3)
P 		185
avr 63.6
(-1.2) 		23.4
(-3) 		24.5
(-2.9) 		153.8
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 37.5
(-2.4)
A 		30.2
(-3)
A 		52.3
(-1.1)
A 		42.4
(-2)
A 		71
(0.5)
P 		100
(3)
P 		70
B 77.5
(3)
P 		55.7
(-0.5)
A 		44.6
(-2.3)
A 		51.6
(-1.2)
A 		40.3
(-3)
P 		57.2
(-0.3)
A 		37
C 35.3
(-3)
A 		51.3
(-2.3)
A 		47.8
(-2.4)
P 		46.6
(-2.5)
A 		86.1
(-0.7)
A 		169.6
(3)
A 		134
avr 50.1
(-2.6) 		45.7
(-3) 		48.2
(-2.8) 		46.9
(-2.9) 		65.8
(-1.1) 		108.9
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 19.9
(2.6)
P 		8.5
(-3)
A 		10.4
(-2.1)
A 		20.7
(3)
P 		12
B 21.8
(1.7)
A 		6.1
(-2)
A 		1.9
(-3)
A 		27.4
(3)
P 		26
C 22.5
(1.1)
P 		2
(-3)
A 		8.9
(-1.6)
A 		32.3
(3)
P 		30
avr 21.4
(1.5) 		5.5
(-3) 		7.1
(-2.5) 		26.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 6.9
(-3)
A 		10.7
(-1.7)
A 		11.4
(-1.4)
A 		10.7
(-1.7)
A 		21.4
(2)
P 		24.3
(3)
P 		17
B 27
(3)
P 		18.5
(-0.1)
A 		10.8
(-3)
A 		13.7
(-1.9)
A 		16.4
(-0.9)
P 		21.3
(0.9)
A 		16
C 13.1
(-2.5)
A 		15.7
(-2.2)
A 		12.2
(-2.6)
P 		9.4
(-3)
A 		27.8
(-0.7)
A 		56.8
(3)
A 		47
avr 15.7
(-1.8) 		15
(-2) 		11.5
(-2.9) 		11.3
(-3) 		21.9
(-0.2) 		34.1
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191826_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17572
Sequence Type Exemplar sequence
Representative Public ID C31E10.8 NCBI
Target Description C31E10.8 /REP_DB=WormBase Gene ID /WP=CE08508 /TR=Q93316 /GB=CAB01733.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=S.pombe protein C4G8.04 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077935
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027030 ENSEMBL cdna:SNAP chromosome:CEL140:X:14003025:14008789:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077935 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000027036 7/11 Cross Hyb Matching Probes None
C31E10.8 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14003024-14011602(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01733 Hypothetical protein C31E10.8 [Caenorhabditis elegans] ref|NP_510336.2| C31E10.8 [Caenorhabditis elegans] 0.0
blast CAE63048 Hypothetical protein CBG07319 [Caenorhabditis briggsae] 0.0
blast XP_788881 PREDICTED: similar to tbc1 domain family member 2 (XO622) [Strongylocentrotus purpuratus] 1.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:191826_S_AT
agattctccgagattcagggacaatagattcttcagttcaacgaattccagttgtacttc
aatggaatatgacgacacttttgagctatactcggatgaagaacgatcaagaagaagagt
tgcaataacgtctcataaacgatttgccactccatcaaaacaacttaatcttcagcggaa
agatttaacatttgatgatccgtacattgtcccagtcccaggtacatctcaatattttac
cgcacagtttaatgatcgctttttgttttcagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCTCCGAGATTCAGGGACAAT 425 65 3159 Antisense
GGGACAATAGATTCTTCAGTTCAAC 645 493 3176 Antisense
AACGAATTCCAGTTGTACTTCAATG 220 145 3198 Antisense
GACGACACTTTTGAGCTATACTCGG 241 379 3229 Antisense
TCTCATAAACGATTTGCCACTCCAT 695 609 3289 Antisense
GCCACTCCATCAAAACAACTTAATC 339 279 3304 Antisense
TTGATGATCCGTACATTGTCCCAGT 302 705 3350 Antisense
CCCAGTCCCAGGTACATCTCAATAT 37 259 3369 Antisense
CATCTCAATATTTTACCGCACAGTT 365 213 3383 Antisense
ACCGCACAGTTTAATGATCGCTTTT 526 89 3397 Antisense
AATGATCGCTTTTTGTTTTCAGAAA 544 163 3409 Antisense
Sequence Source Affymetrix Proprietary Database