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[191824_at] ATP binding transport protein

Description C10C6.5 /REP_DB=WormBase Gene ID /WP=CE23539 /TR=P90746 /GB=CAB05682.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ATP binding transport protein
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 94      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 95      6grp_total > 85      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 423.1
(-3)
P 		685.3
(3)
P 		661.2
(2.4)
P 		643.3
(2)
P 		262
B 470.9
(-3)
P 		527.2
(-1.3)
P 		559.5
(-0.3)
P 		666.2
(3)
P 		195
C 483.8
(-3)
P 		638.7
(3)
P 		623.7
(2.4)
P 		638.1
(3)
P 		155
avr 459.3
(-3) 		617.1
(2) 		614.8
(1.9) 		649.2
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 977
1 2 3 4 5 6 range
A 320.1
(-3)
P 		434.5
(-2.3)
P 		464.8
(-2.1)
P 		820.7
(0.2)
P 		1081.9
(1.9)
P 		1256.3
(3)
P 		936
B 302.8
(-3)
P 		375.2
(-2.6)
P 		682.6
(-0.7)
P 		943.8
(0.9)
P 		1051.1
(1.6)
P 		1279.9
(3)
P 		977
C 320
(-3)
P 		344.2
(-2.8)
P 		634
(-0.5)
P 		930.9
(1.9)
P 		1014.7
(2.6)
P 		1062.8
(3)
P 		743
avr 314.3
(-3) 		384.6
(-2.5) 		593.8
(-1.1) 		898.5
(1) 		1049.2
(2) 		1199.7
(3) 		885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 154.1
(1.6)
P 		148.8
(1.2)
P 		172.9
(3)
P 		94.2
(-3)
P 		79
B 150.2
(3)
P 		130.2
(-2.9)
P 		129.7
(-3)
P 		142
(0.6)
P 		21
C 160.1
(-0.1)
P 		183.6
(1.2)
P 		217.4
(3)
P 		107.6
(-3)
P 		110
avr 154.8
(1.1) 		154.2
(1) 		173.3
(3) 		114.6
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 59
(-3)
P 		154.5
(-0.9)
P 		101.2
(-2.1)
P 		208.1
(0.3)
P 		326.5
(3)
P 		305.9
(2.5)
P 		268
B 105.4
(-3)
P 		124.9
(-2.7)
P 		165.8
(-2)
P 		250
(-0.7)
P 		427.1
(2.2)
P 		477.3
(3)
P 		372
C 118.6
(-2.7)
P 		105
(-3)
P 		161.4
(-1.7)
P 		187.2
(-1)
P 		328.4
(2.3)
P 		355.8
(3)
P 		251
avr 94.3
(-3) 		128.1
(-2.3) 		142.8
(-2) 		215.1
(-0.5) 		360.7
(2.6) 		379.7
(3) 		285
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9218
Sequence Type Exemplar sequence
Representative Public ID C10C6.5 NCBI
Target Description C10C6.5 /REP_DB=WormBase Gene ID /WP=CE23539 /TR=P90746 /GB=CAB05682.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=ATP binding transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069763(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069763 NCBI Caenorhabditis elegans C10C6.5 (C10C6.5) mRNA, complete cds. 10/11 None
SNAP00000034488 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11470407:11473282:1 10/11 None
GENEFINDER00000034492 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11471507:11473282:1 10/11 None
C10C6.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:11470156:11473282:1 gene:C10C6.5 10/11 None
C10C6.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:11470407:11473388:1 gene:C10C6.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11470412-11473288(+) 95.64 100.0
Public Domain and Genome References
Gene Title ATP binding transport protein
Ensembl C10C6.5
Entrez Gene 178069 Entrez gene
SwissProt P90746 EMBL-EBI
WormBase CE28537 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6952 defense response inferred from electronic annotation QuickGO AmiGO
42829 defense response to pathogen inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05682 Hypothetical protein C10C6.5 [Caenorhabditis elegans] ref|NP_502164.1| C10C6.5 [Caenorhabditis elegans] 0.0
blast CAE62113 Hypothetical protein CBG06151 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 3.2E-35
Pfam IPR003439 EMBL-EBI ABC transporter 3.1E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502164.1 5 392-414,427-448,458-480,510-532,584-606
C10C6.5.2 5 392-414,427-448,458-480,510-532,584-606
C10C6.5.1 5 392-414,427-448,458-480,510-532,584-606
SNAP00000034488 5 398-420,433-454,464-486,516-538,590-612
GENEFINDER00000034492 6 190-209,214-236,249-270,280-302,332-354,406-428
Sequence
Target Sequence 
>C. ELEGANS:191824_AT
ttccaggttctatacgcatgcctcatcgccttcctcattgagcaatcttcttcagcttgt
ggaatcatgatttcttgcatttcgccgtctttaccgatcgcaatgtcaactgctggccca
atgctcacacttctatcattgactggaggtctttacgctaatgttggtgcactaccatca
tacatctcgtggatacagtatctctcgtggttcagatatggatttgaggcttttgcaatc
aatcagtggagcagtgtcaatgaacagaatacaactatttggactgatgagaaacgtgat
tccgtactctcccaattgtcattccgcgctgaaatgttttatccggatctcttcatcatg
tctgcattcattttgatcttctacactattggttacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAGGTTCTATACGCATGCCTCA 118 701 1483 Antisense
CATCGCCTTCCTCATTGAGCAATCT 538 211 1506 Antisense
TGAGCAATCTTCTTCAGCTTGTGGA 348 569 1521 Antisense
ATCATGATTTCTTGCATTTCGCCGT 574 29 1546 Antisense
CCGATCGCAATGTCAACTGCTGGCC 113 265 1576 Antisense
ATGCTCACACTTCTATCATTGACTG 180 43 1603 Antisense
TGGTGCACTACCATCATACATCTCG 263 553 1647 Antisense
GATACAGTATCTCTCGTGGTTCAGA 407 423 1674 Antisense
GAGAAACGTGATTCCGTACTCTCCC 690 389 1771 Antisense
TTTATCCGGATCTCTTCATCATGTC 209 675 1820 Antisense
GATCTTCTACACTATTGGTTACGCT 376 419 1857 Antisense
Sequence Source Affymetrix Proprietary Database