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[191823_s_at] UNC-7-like protein

Description R12H7.1 /REP_DB=WormBase Gene ID /WP=CE28246 /GEN=unc-9 /TR=Q9NAN6 /GB=CAB61030.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UNC-7-like protein
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 32      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 676.6
(3)
P 		340
(-1)
P 		304.4
(-1.4)
P 		173.8
(-3)
P 		503
B 787.6
(3)
P 		404.5
(-0.9)
P 		265.6
(-2.4)
P 		204
(-3)
P 		584
C 747.5
(3)
P 		424.5
(-0.3)
P 		307.3
(-1.5)
P 		160.1
(-3)
P 		587
avr 737.2
(3) 		389.7
(-0.7) 		292.4
(-1.8) 		179.3
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 450.1
(1.9)
P 		517
(3)
P 		342.7
(0.1)
P 		274.3
(-1)
P 		269
(-1.1)
P 		155.5
(-3)
P 		362
B 502.6
(3)
P 		499.1
(2.9)
P 		348.5
(0.2)
P 		264.8
(-1.4)
P 		245.2
(-1.7)
P 		176.8
(-3)
P 		326
C 584.2
(3)
P 		448.6
(1.1)
P 		337.5
(-0.5)
P 		270.4
(-1.5)
P 		267.4
(-1.5)
P 		165.9
(-3)
P 		418
avr 512.3
(3) 		488.2
(2.6) 		342.9
(0.1) 		269.8
(-1.2) 		260.5
(-1.4) 		166.1
(-3) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 246.4
(3)
P 		73.8
(-1.7)
P 		79.6
(-1.5)
P 		25.4
(-3)
P 		221
B 251.2
(3)
P 		99.9
(-1.4)
P 		61.5
(-2.5)
P 		43.5
(-3)
P 		208
C 247.5
(3)
P 		122
(-0.4)
P 		107.1
(-0.8)
P 		27
(-3)
P 		221
avr 248.4
(3) 		98.6
(-1.2) 		82.7
(-1.6) 		32
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 83
(-1.1)
P 		183.9
(3)
P 		74.6
(-1.5)
P 		69.6
(-1.7)
P 		81.2
(-1.2)
P 		37.9
(-3)
P 		146
B 174.9
(3)
P 		166.1
(2.5)
P 		84.6
(-2)
P 		70.1
(-2.8)
P 		99.6
(-1.1)
P 		65.9
(-3)
P 		109
C 216.5
(3)
P 		136.9
(0.1)
P 		85.9
(-1.8)
P 		54.4
(-3)
P 		86.5
(-1.8)
P 		55.5
(-3)
P 		162
avr 158.1
(2.8) 		162.3
(3) 		81.7
(-1.4) 		64.7
(-2.4) 		89.1
(-1) 		53.1
(-3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191823_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17395
Sequence Type Exemplar sequence
Representative Public ID R12H7.1 NCBI
Target Description R12H7.1 /REP_DB=WormBase Gene ID /WP=CE28246 /GEN=unc-9 /TR=Q9NAN6 /GB=CAB61030.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=UNC-7-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171790 NCBI Caenorhabditis elegans UNCoordinated family member (unc-9) (unc-9) mRNA, complete cds. 11/11 A 
GENEFINDER00000017901 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13212352:13215747:1 11/11 None
SNAP00000017893 ENSEMBL cdna:SNAP chromosome:CEL140:X:13212923:13215747:1 11/11 None
R12H7.1.3 ENSEMBL cdna:known chromosome:CEL140:X:13201692:13216652:1 gene:R12H7.1 11/11 None
R12H7.1.2 ENSEMBL cdna:known chromosome:CEL140:X:13212305:13215747:1 gene:R12H7.1 11/11 A 
R12H7.1.1 ENSEMBL cdna:known chromosome:CEL140:X:13212310:13215747:1 gene:R12H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13212351-13215747(+) 100.0 100.0
Public Domain and Genome References
Gene Title UNC-7-like protein
Gene Symbol unc-9
Ensembl R12H7.1
Entrez Gene 181443 Entrez gene
SwissProt O01393 EMBL-EBI
WormBase CE28246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628363_AT innexin 3 dm
DROSGENOME1:154674_AT innexin 3 dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61030 Hypothetical protein R12H7.1 [Caenorhabditis elegans] ref|NP_741917.1| UNCoordinated family member (unc-9) [Caenorhabditis elegans] sp|O01393|UNC9_CAEEL Innexin unc-9 (Uncoordinated protein 9) emb|CAE61397.1| Hypothetical protein CBG05256 [Caenorhabditis briggsae] gb|AAB51534.1| UNC-9 [Caenorhabditis elegans] 0.0
blast T24203 hypothetical protein R12H7.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 5.3E-75
Pfam IPR000990 EMBL-EBI Innexin 6.6E-121
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741917.1 4 29-51,104-126,195-217,285-307
R12H7.1.3 4 29-51,104-126,195-217,285-307
R12H7.1.2 4 29-51,104-126,195-217,285-307
R12H7.1.1 4 29-51,104-126,195-217,285-307
GENEFINDER00000017901 4 27-49,104-126,218-240,308-330
SNAP00000017893 3 74-96,165-187,255-277
Sequence
Target Sequence 
>C. ELEGANS:191823_S_AT
atttgcacacgatcttccggtgctgctgtcacgttcctctatatctctgtcaaaattctg
tacaccgtgaacatcgtcggccaaatctttctactgaacacgtttctcggtaaccgtagc
aaatggtacggactgcaagttctcaacgacttgatgaacggacgagaatgggaggagtct
ggtcattttccacgtgtaacgttatgtgactttgaagtaaaagtactgggaaacgtgcac
cgacatacagtacaatgtgtacttatgattaacatgttcaacgagaagatctttctgttc
ttgtggttctggtacttccttcttgccggtgctactttgtgctcgcttttctactggatc
tacatttcagtggtgccaagcaggcagctcaactttgttggaaagtatctgactggaatc
gagggatataaaatggtggattcgcaatcactacgacgttttgtatttcactttttaaga
caggatggtgttttcctacttcgtatggttgcaactcacgccggagaactaccctgttac
gagcttgcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCACACGATCTTCCGGTGCTG 461 17 604 Antisense
GTTCCTCTATATCTCTGTCAAAATT 460 441 636 Antisense
TGTACACCGTGAACATCGTCGGCCA 499 559 662 Antisense
GTCGGCCAAATCTTTCTACTGAACA 60 473 679 Antisense
GTACGGACTGCAAGTTCTCAACGAC 398 457 729 Antisense
GGAAACGTGCACCGACATACAGTAC 668 527 832 Antisense
AGATCTTTCTGTTCTTGTGGTTCTG 255 67 890 Antisense
CTCGCTTTTCTACTGGATCTACATT 574 233 945 Antisense
GATGGTGTTTTCCTACTTCGTATGG 63 409 1087 Antisense
CTTCGTATGGTTGCAACTCACGCCG 291 219 1102 Antisense
AACTACCCTGTTACGAGCTTGCGAA 220 139 1130 Antisense
Sequence Source Affymetrix Proprietary Database