[Home] | [Total List]

[191817_s_at] tyrosine protein phosphatase

Description F54F12.1 /REP_DB=WormBase Gene ID /WP=CE16114 /TR=O17889 /GB=CAB04464.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine protein phosphatase
Cluster 6grp_total > 69      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 12.9
(-2.6)
A 		47.5
(3)
A 		10.4
(-3)
A 		18.7
(-1.7)
A 		37
B 20.4
(-1.5)
A 		20.1
(-1.5)
A 		6.9
(-3)
A 		59.9
(3)
A 		53
C 21.9
(-2.2)
A 		3.4
(-3)
A 		7.5
(-2.8)
A 		135.3
(3)
A 		132
avr 18.4
(-2) 		23.7
(-1.5) 		8.3
(-3) 		71.3
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 48.6
(2.6)
A 		2.6
(-3)
A 		21
(-0.7)
A 		22.5
(-0.6)
A 		22
(-0.6)
A 		51.5
(3)
A 		49
B 23.9
(0.7)
A 		20.6
(0.1)
A 		2.5
(-3)
A 		28.4
(1.5)
A 		37.2
(3)
A 		34.5
(2.5)
A 		35
C 5.6
(-2.7)
A 		37.1
(0.7)
A 		2.8
(-3)
A 		11.9
(-2)
A 		42.9
(1.3)
A 		58.6
(3)
A 		56
avr 26
(-0.4) 		20.1
(-1.3) 		8.8
(-3) 		20.9
(-1.2) 		34
(0.8) 		48.2
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.7
(-1.4)
A 		10.3
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		8
B 6.5
(-0.4)
A 		5
(-1.2)
A 		1.6
(-3)
A 		12.8
(3)
A 		11
C 7.2
(-1.3)
A 		1
(-3)
A 		2.6
(-2.6)
A 		22.8
(3)
A 		22
avr 6.1
(-0.8) 		5.4
(-1.2) 		2.3
(-3) 		12.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9
(1.2)
A 		0.9
(-3)
A 		4.6
(-1.1)
A 		5.7
(-0.5)
A 		6.6
(-0.1)
A 		12.5
(3)
A 		12
B 8.3
(0.2)
A 		6.9
(-0.4)
A 		0.6
(-3)
A 		7.5
(-0.1)
A 		15.1
(3)
A 		12.9
(2.1)
A 		15
C 2.1
(-2.6)
A 		11.3
(0.4)
A 		0.7
(-3)
A 		2.4
(-2.5)
A 		13.9
(1.2)
A 		19.6
(3)
A 		19
avr 6.5
(-0.9) 		6.4
(-1) 		2
(-3) 		5.2
(-1.5) 		11.9
(1.6) 		15
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191817_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8045
Sequence Type Exemplar sequence
Representative Public ID F54F12.1 NCBI
Target Description F54F12.1 /REP_DB=WormBase Gene ID /WP=CE16114 /TR=O17889 /GB=CAB04464.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067308 NCBI Caenorhabditis elegans F54F12.1 (F54F12.1) mRNA, complete cds. 11/11 None
SNAP00000006441 ENSEMBL cdna:SNAP chromosome:CEL140:III:13049133:13053761:-1 11/11 None
GENEFINDER00000006444 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13049133:13054833:-1 11/11 None
F54F12.1 ENSEMBL cdna:known chromosome:CEL140:III:13049133:13053601:-1 gene:F54F12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13049128-13053597(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine protein phosphatase
Ensembl F54F12.1
Entrez Gene 176727 Entrez gene
SwissProt O17889 EMBL-EBI
WormBase CE16114 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 0.0
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 1.0E-116
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 1.0E-110
blast AAK18987 Hypothetical protein W03F11.4 [Caenorhabditis elegans] ref|NP_490945.1| W03F11.4 [Caenorhabditis elegans] 2.0E-93
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-70
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.3E-17
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-70
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.8E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499709.1 1 740-762
F54F12.1 1 740-762
SNAP00000006441 1 787-809
GENEFINDER00000006444 1 846-868
Sequence
Target Sequence 
>C. ELEGANS:191817_S_AT
agactgtcagtgttcttcatttcactgcctggccagatcacggagctccgaaaaatcctg
actatgcactggacatcatcagattctgcgaaagttacaagacaagtgttctggtgcact
gctcggcaggagtcggacgtactggaactctcgtggctatcaagtatggaattcaactgt
gtactactgaacgtaccaccaacttgcttagcattgtgtgccctgtccgtaactgtcgtt
ttggagccgttcaaagtgcacagcaactcatgtatttgatcgtgtgcatcacgaaaggag
tcatggcaaaggaaggagtgttgtattggcgaagctttgatgctatcacctattaccacg
aacaaatacttgctgataaatatcacgataataatgacggacctacagcggaaagagctg
caaacatgaatgacacaacagttattatggaagattattgtgataagaagttggaagagt
ttaagaaggcacatccgaactacgaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTGTCAGTGTTCTTCATTTCAC 257 71 3104 Antisense
TCATTTCACTGCCTGGCCAGATCAC 26 621 3120 Antisense
GAGCTCCGAAAAATCCTGACTATGC 39 387 3146 Antisense
GACAAGTGTTCTGGTGCACTGCTCG 257 365 3204 Antisense
GCACTGCTCGGCAGGAGTCGGACGT 53 315 3219 Antisense
AGTCGGACGTACTGGAACTCTCGTG 401 57 3234 Antisense
TGAACGTACCACCAACTTGCTTAGC 634 573 3291 Antisense
GTAACTGTCGTTTTGGAGCCGTTCA 505 461 3332 Antisense
GGAGCCGTTCAAAGTGCACAGCAAC 63 521 3346 Antisense
ATGCTATCACCTATTACCACGAACA 414 43 3443 Antisense
GAAGGCACATCCGAACTACGAAGTC 99 333 3588 Antisense
Sequence Source Affymetrix Proprietary Database