[Home] | [Total List]

[191812_s_at] FYVE zinc finger

Description VF11C1L.1 /REP_DB=WormBase Gene ID /WP=CE18979 /GEN=ppk-3 /TR=Q9XTF8 /GB=CAA19436.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=FYVE zinc finger
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 55      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 351.4
(3)
P 		179.8
(-3)
P 		282.2
(0.6)
P 		189.5
(-2.7)
M 		172
B 294.8
(3)
P 		264.6
(1.8)
P 		138.6
(-3)
P 		226.6
(0.4)
P 		156
C 263.8
(0.3)
P 		282.6
(2.3)
P 		289.3
(3)
P 		232.4
(-3)
P 		57
avr 303.3
(3) 		242.3
(-1.2) 		236.7
(-1.6) 		216.2
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 363.7
(3)
P 		322.5
(1.8)
P 		193.9
(-2.1)
P 		301
(1.1)
P 		164.8
(-3)
P 		246.5
(-0.5)
P 		199
B 338.7
(2.7)
P 		346
(3)
P 		211.4
(-2)
P 		241
(-0.9)
P 		183.5
(-3)
P 		246.3
(-0.7)
P 		163
C 302.8
(0.4)
P 		265
(-1)
P 		379
(3)
P 		206
(-3)
P 		307.3
(0.5)
P 		231.3
(-2.1)
P 		173
avr 335.1
(3) 		311.2
(1.8) 		261.4
(-0.8) 		249.3
(-1.4) 		218.5
(-3) 		241.4
(-1.8) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 127.9
(3)
P 		39
(-2.3)
P 		73.8
(-0.2)
P 		27.7
(-3)
M 		100
B 94
(3)
P 		65.3
(0.2)
P 		32.1
(-3)
P 		48.3
(-1.4)
P 		62
C 87.3
(1.7)
P 		81.2
(1.1)
P 		100.8
(3)
P 		39.2
(-3)
P 		62
avr 103.1
(3) 		61.8
(-0.8) 		68.9
(-0.2) 		38.4
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 67.1
(-0.9)
P 		114.7
(3)
P 		42.2
(-3)
P 		76.3
(-0.2)
P 		49.7
(-2.4)
P 		60
(-1.5)
P 		73
B 117.8
(3)
P 		115.2
(2.8)
P 		51.3
(-3)
P 		63.8
(-1.9)
P 		74.6
(-0.9)
P 		91.9
(0.7)
P 		67
C 112.2
(3)
P 		80.9
(0.3)
P 		96.5
(1.7)
P 		41.4
(-3)
P 		99.4
(1.9)
P 		77.4
(0.1)
P 		71
avr 99
(2.4) 		103.6
(3) 		63.3
(-2.6) 		60.5
(-3) 		74.6
(-1) 		76.4
(-0.8) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191812_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17588
Sequence Type Exemplar sequence
Representative Public ID VF11C1L.1 NCBI
Target Description VF11C1L.1 /REP_DB=WormBase Gene ID /WP=CE18979 /GEN=ppk-3 /TR=Q9XTF8 /GB=CAA19436.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=FYVE zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077754 NCBI Caenorhabditis elegans PIP Kinase family member (ppk-3) (ppk-3) mRNA, complete cds. 11/11 None
VF11C1L.1 ENSEMBL cdna:known chromosome:CEL140:X:12968879:12974957:-1 gene:VF11C1L.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12969181-12974957(-) 100.0 100.0
Public Domain and Genome References
Gene Title FYVE zinc finger
Gene Symbol ppk-3
Ensembl VF11C1L.1
Entrez Gene 181428 Entrez gene
SwissProt Q9XTF8 EMBL-EBI
WormBase CE18979 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258361_AT phosphatidylinositol-4-phosphate 5-kinase family protein at
CANINE:1606162_AT similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 3 cfa
CANINE_2:CFAAFFX.21146.1.S1_S_AT similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 3 cfa
CANINE_2:CFAAFFX.21147.1.S1_AT similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 3 cfa
CANINE_2:CFAAFFX.21147.1.S1_S_AT similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 3 cfa
DROSOPHILA_2:1628190_AT dm
DROSGENOME1:141367_AT dm
CHICKEN:GGAAFFX.5553.2.S1_S_AT similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III; phosphatidylinositol-4-phosphate 5-kinase, type III; 1-phosphatidylinositol-4-phosphate 5-kinase; PtdIns(4)P-5-kinase; FYVE finger-containing phosphoinositide kina... gga
HG-U133_PLUS_2:213111_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133A_2:213111_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133A:213111_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95B:42737_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HU35KSUBB:RC_R53765_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HU35KSUBB:RC_R53044_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HU35KSUBB:RC_H29209_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
U133_X3P:G6679187_3P_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
U133_X3P:HS2.406929.1.S1_3P_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
U133_X3P:HS.158135.0.S1_3P_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133_PLUS_2:1553917_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133_PLUS_2:1557719_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95AV2:32085_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95B:42738_G_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95C:65262_R_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95C:66571_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133_PLUS_2:242926_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U133B:242926_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
HG-U95C:62598_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
U133_X3P:HS.173939.0.A1_3P_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III hs
MOE430A:1422994_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MOUSE430_2:1422994_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MOUSE430A_2:1422994_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MG-U74AV2:97712_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MG-U74CV2:166598_R_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MOE430B:1452994_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MOUSE430_2:1452994_AT phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III mm
MOE430B:1446974_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III (Pip5k3), mRNA mm
MOUSE430_2:1446974_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III (Pip5k3), mRNA mm
MU19KSUBC:TC35283_AT Phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III (Pip5k3), mRNA mm
RG-U34B:RC_AI030529_AT similar to mKIAA0981 protein rn
RAE230B:1380216_AT similar to mKIAA0981 protein rn
RAT230_2:1380216_AT similar to mKIAA0981 protein rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
16308 1-phosphatidylinositol-4-phosphate 5-kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91791 Hypothetical protein VF11C1L.1 [Caenorhabditis elegans] emb|CAA19436.1| Hypothetical protein VF11C1L.1 [Caenorhabditis elegans] ref|NP_510155.1| PIP Kinase family member (ppk-3) [Caenorhabditis elegans] 0.0
blast CAE70363 Hypothetical protein CBG16921 [Caenorhabditis briggsae] 0.0
blast XP_580879 PREDICTED: similar to phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III isoform 2 isoform 1 [Bos taurus] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002498 EMBL-EBI Phosphatidylinositol-4-phosphate 5-kinase 8.2E-48
Pfam IPR002498 EMBL-EBI Phosphatidylinositol-4-phosphate 5-kinase 2.8E-9
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 4.1E-16
Sequence
Target Sequence 
>C. ELEGANS:191812_S_AT
gtttgcccccaactattttgattatctgacaacgtcggcgaccgaaagcaaattgacgac
cctgtgcaaagtatatggagtgtttagaataggatacaagagcaagacgactacattgaa
agttgacattcttgtaatggagtacctgttttacaatcacaatgttagccaagtctggga
cctgaagggctctcttcggaatagactcgcatcgactggaaaaagcgccaacgagatggt
tcttttggacgaaaactttgtgaaagacctctggaatcagcagctctatgtgctgccgca
ctcaaaagcggccatgaatcaagcgatcagcaatgacagccacttcctgagctctcaata
catcatggactactcgcttctggttggtgtcgacgatgacaacggagaattgattctggg
cattgttgactacatgagaacgtatacgttggataagaaactcgaatcatgggtgaaaat
cgttgccattcccggagcacacttgccaacaattctgagtccggaaatgtattgtgccag
attctcggaagccatcgactcgtactttccggttgtacctgatcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCCCCCAACTATTTTGATTAT 488 451 3522 Antisense
GATTATCTGACAACGTCGGCGACCG 580 427 3541 Antisense
CAAGTCTGGGACCTGAAGGGCTCTC 290 183 3691 Antisense
GGCTCTCTTCGGAATAGACTCGCAT 665 537 3709 Antisense
AAGACCTCTGGAATCAGCAGCTCTA 65 155 3785 Antisense
GATCAGCAATGACAGCCACTTCCTG 582 419 3846 Antisense
AATACATCATGGACTACTCGCTTCT 634 171 3878 Antisense
GCTTCTGGTTGGTGTCGACGATGAC 646 303 3897 Antisense
TGGGTGAAAATCGTTGCCATTCCCG 636 553 3991 Antisense
GTGCCAGATTCTCGGAAGCCATCGA 66 479 4055 Antisense
TACTTTCCGGTTGTACCTGATCAGT 528 643 4084 Antisense
Sequence Source Affymetrix Proprietary Database