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[191809_at] Calcitonin receptor family

Description ZK643.3 /REP_DB=WormBase Gene ID /WP=CE01112 /TR=SW:P30650 /GB=CAA77471.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Calcitonin receptor family
Cluster 6grp_high1_10_10 > 14      6grp_total > 13      4grp_total > 55      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 315.8
(3)
P 		105.6
(-2.8)
A 		123.6
(-2.3)
A 		97.8
(-3)
A 		218
B 240.3
(3)
P 		148.8
(-0.8)
A 		97.2
(-3)
A 		96.3
(-3)
A 		144
C 252.9
(3)
P 		156.1
(-0.7)
A 		135.1
(-1.5)
A 		96
(-3)
A 		157
avr 269.7
(3) 		136.8
(-1.6) 		118.6
(-2.2) 		96.7
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 293.3
(2.8)
P 		300.8
(3)
P 		184
(-0.2)
P 		195.2
(0.1)
P 		166.2
(-0.7)
P 		80.3
(-3)
A 		221
B 222.5
(3)
P 		200.4
(2)
P 		151.7
(-0.1)
P 		162.9
(0.4)
P 		175.2
(0.9)
P 		84.2
(-3)
P 		138
C 254.1
(2.8)
P 		259.4
(3)
P 		247.9
(2.6)
P 		130
(-1.2)
M 		145
(-0.7)
M 		74.7
(-3)
A 		185
avr 256.6
(3) 		253.5
(2.9) 		194.5
(0.9) 		162.7
(-0.2) 		162.1
(-0.2) 		79.7
(-3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 115
(3)
P 		22.9
(-2.5)
A 		32.3
(-1.9)
A 		14.3
(-3)
A 		101
B 76.6
(3)
P 		36.7
(-1.3)
A 		22.5
(-2.8)
A 		20.5
(-3)
A 		56
C 83.7
(3)
P 		44.9
(-0.4)
A 		47.1
(-0.3)
A 		16.2
(-3)
A 		68
avr 91.8
(3) 		34.8
(-1.6) 		34
(-1.6) 		17
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 54.1
(-0.6)
P 		107
(3)
P 		40.1
(-1.6)
P 		49.5
(-0.9)
P 		50.2
(-0.9)
P 		19.6
(-3)
A 		87
B 77.4
(3)
P 		66.7
(1.6)
P 		36.8
(-2.3)
P 		43.1
(-1.5)
P 		71.2
(2.2)
P 		31.4
(-3)
P 		46
C 94.2
(3)
P 		79.1
(1.7)
P 		63.1
(0.3)
P 		26.1
(-2.9)
M 		46.9
(-1.1)
M 		25
(-3)
A 		69
avr 75.2
(2.1) 		84.3
(3) 		46.7
(-0.8) 		39.6
(-1.5) 		56.1
(0.1) 		25.3
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6733
Sequence Type Exemplar sequence
Representative Public ID ZK643.3 NCBI
Target Description ZK643.3 /REP_DB=WormBase Gene ID /WP=CE01112 /TR=SW:P30650 /GB=CAA77471.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Calcitonin receptor family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066577 NCBI Caenorhabditis elegans ZK643.3 (ZK643.3) mRNA, complete cds. 11/11 None
SNAP00000011217 ENSEMBL cdna:SNAP chromosome:CEL140:III:8949264:8952701:1 10/11 None
ZK643.3 ENSEMBL cdna:known chromosome:CEL140:III:8944720:8952852:1 gene:ZK643.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011238 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8944715-8952697(+) 100.0 100.0
Public Domain and Genome References
Gene Title Calcitonin receptor family
Ensembl ZK643.3
Entrez Gene 191374 Entrez gene
SwissProt P30650 EMBL-EBI
WormBase CE33750 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA77471 Hypothetical protein ZK643.3 [Caenorhabditis elegans] ref|NP_498978.2| ZK643.3 [Caenorhabditis elegans] sp|P30650|ZK643_CAEEL G-protein coupled receptor ZK643.3 0.0
blast CAE62707 Hypothetical protein CBG06860 [Caenorhabditis briggsae] 1.0E-149
blast CAE62707 Hypothetical protein CBG06860 [Caenorhabditis briggsae] 1.0E-145
blast S23242 hypothetical protein ZK643.4 - Caenorhabditis elegans 4.0E-98
blast S23242 hypothetical protein ZK643.4 - Caenorhabditis elegans 5.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 7.9E-19
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 1.1E-78
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 7.9E-19
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 3.2E-70
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498978.2 6 225-247,260-282,306-328,341-363,383-405,425-444
ZK643.3 6 225-247,260-282,306-328,341-363,383-405,425-444
SNAP00000011217 6 144-166,181-203,259-281,301-323,342-364,379-396
Sequence
Target Sequence 
>C. ELEGANS:191809_AT
gactattacatactgctcaacattctgaaggagagactctccgaagctacaaagttatat
gttggggtgtccctggagtgatcacagttgtctacatatttgtccgaagtctgaatgacg
acgttggaatgtgttggattgaaaactcgacggtcgcctggatcgaatggatgatcataa
caccatctcttcttgcaatgggtgtcaatttgctcttgctcgggctaatcgtctacattc
tcgtcaaaaaactccgatgtgatccgcacttggagagaattcaatacagaaaagctgtcc
gcggagcactcatgcttattccagtattcggtgttcaacagcttcttacaatatatcgat
tcagtaacacatactatcaggttacggatcaatcacttaatggattacagggaatgtttg
tctcatttatcgtttgttacacaaatcgttctgtcgtagaatgtgttctgaaattctggt
catcacatcaggagaagcgggctctcggagctgaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATTACATACTGCTCAACATTC 309 373 989 Antisense
GAGAGACTCTCCGAAGCTACAAAGT 373 395 1019 Antisense
TTGGGGTGTCCCTGGAGTGATCACA 391 707 1050 Antisense
GACGGTCGCCTGGATCGAATGGATG 128 377 1137 Antisense
TCATAACACCATCTCTTCTTGCAAT 59 621 1163 Antisense
AATGGGTGTCAATTTGCTCTTGCTC 386 163 1185 Antisense
AAAACTCCGATGTGATCCGCACTTG 65 129 1236 Antisense
CAGAAAAGCTGTCCGCGGAGCACTC 536 205 1275 Antisense
GAGCACTCATGCTTATTCCAGTATT 46 391 1292 Antisense
GTTTGTCTCATTTATCGTTTGTTAC 56 453 1404 Antisense
GAAGCGGGCTCTCGGAGCTGAATGC 434 343 1482 Antisense
Sequence Source Affymetrix Proprietary Database