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[191807_at] G protein coupled receptor

Description C43C3.2 /REP_DB=WormBase Gene ID /WP=CE01524 /TR=SW:Q09502 /GB=CAA87329.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G protein coupled receptor
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 248
(0.6)
P 		193.7
(-0.7)
P 		99.1
(-3)
A 		349.9
(3)
P 		251
B 228.5
(0.7)
P 		112.8
(-2.2)
P 		82.5
(-3)
A 		318.6
(3)
P 		236
C 279.9
(1.6)
P 		201.5
(-0.5)
P 		107.2
(-3)
P 		331.6
(3)
P 		224
avr 252.1
(0.9) 		169.3
(-1.2) 		96.3
(-3) 		333.4
(3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 256.7
(3)
P 		152.8
(-1.7)
P 		182.4
(-0.4)
P 		139.8
(-2.3)
P 		124.5
(-3)
P 		160.6
(-1.4)
P 		132
B 199.6
(3)
P 		189.8
(2)
P 		139.6
(-3)
P 		152.7
(-1.7)
P 		141
(-2.9)
P 		173.6
(0.4)
P 		60
C 172.5
(2.5)
P 		177.4
(3)
P 		133.4
(-1.3)
P 		125.8
(-2.1)
P 		124.1
(-2.3)
P 		116.5
(-3)
P 		61
avr 209.6
(3) 		173.3
(0.3) 		151.8
(-1.4) 		139.4
(-2.3) 		129.9
(-3) 		150.2
(-1.5) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 90.3
(3)
P 		42.1
(-1.5)
P 		25.9
(-3)
A 		51.2
(-0.6)
P 		64
B 72.9
(3)
P 		27.9
(-2)
P 		19.1
(-3)
A 		67.9
(2.4)
P 		54
C 92.6
(3)
P 		57.9
(-0.8)
P 		37.4
(-3)
P 		55.9
(-1)
P 		55
avr 85.3
(3) 		42.6
(-1.4) 		27.5
(-3) 		58.3
(0.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 47.3
(0.8)
P 		54.4
(3)
P 		39.7
(-1.6)
P 		35.4
(-3)
P 		37.6
(-2.3)
P 		39.1
(-1.8)
P 		19
B 69.4
(3)
P 		63.2
(2)
P 		33.9
(-3)
P 		40.5
(-1.9)
P 		57.3
(1)
P 		64.7
(2.2)
P 		36
C 64
(3)
P 		54.1
(1.5)
P 		34
(-1.7)
P 		25.3
(-3)
P 		40.2
(-0.7)
P 		39
(-0.9)
P 		39
avr 60.2
(3) 		57.2
(2.3) 		35.9
(-2.5) 		33.7
(-3) 		45
(-0.4) 		47.6
(0.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16502
Sequence Type Exemplar sequence
Representative Public ID C43C3.2 NCBI
Target Description C43C3.2 /REP_DB=WormBase Gene ID /WP=CE01524 /TR=SW:Q09502 /GB=CAA87329.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=G protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077228 NCBI Caenorhabditis elegans C43C3.2 (C43C3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031851 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9691771:9696269:1 11/11 None
SNAP00000031846 ENSEMBL cdna:SNAP chromosome:CEL140:X:9693836:9696269:1 11/11 None
C43C3.2 ENSEMBL cdna:known chromosome:CEL140:X:9693836:9696649:1 gene:C43C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9693835-9696269(+) 100.0 100.0
Public Domain and Genome References
Gene Title G protein coupled receptor
Ensembl C43C3.2
Entrez Gene 183408 Entrez gene
SwissProt Q09502 EMBL-EBI
WormBase CE01524 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87329 Hypothetical protein C43C3.2 [Caenorhabditis elegans] ref|NP_509629.1| C43C3.2 [Caenorhabditis elegans] sp|Q09502|YQH2_CAEEL Probable G-protein coupled receptor C43C3.2 0.0
blast CAE69771 Hypothetical protein CBG16052 [Caenorhabditis briggsae] 0.0
blast AAA27938 Hypothetical protein C06G4.5 [Caenorhabditis elegans] 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.0E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.8E-7
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.0E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509629.1 7 57-79,92-114,134-151,171-193,261-283,320-342,362-384
C43C3.2 7 57-79,92-114,134-151,171-193,261-283,320-342,362-384
GENEFINDER00000031851 7 66-88,101-123,143-160,180-202,270-292,329-351,371-393
SNAP00000031846 7 57-79,92-114,134-151,171-193,261-283,320-342,362-384
Sequence
Target Sequence 
>C. ELEGANS:191807_AT
gacgattccagtaggccacattgcaatttatacacttgccatttgctctttccacttcat
ttgctggacaccatactggatctcaattctctactctttgtacgaggagctgtaccaaga
tacaaagagcactgcttctccaccaacgtacgcgttcatatactttatgtacggcgtaca
cgcactaccatatatcaattctgcatccaactttattctctatggacttttaaatcgtca
gctgcacaatgctccagagcgaaaatacactagaaatggagtgggaggccgccaaatgtc
acatgcattgacgacgaacacccgacctgaatatagcgagctaatcgcaataccatccag
cagttgtcgcccggattctcgagtgtcggcaatgatccataacaacaataacaacacgga
atctttacctctggcacagaacatctcgaatatgactaacaaagattctgcaactattgt
tccaatgccaatgtctgccaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATTCCAGTAGGCCACATTGCA 142 379 948 Antisense
TTATACACTTGCCATTTGCTCTTTC 631 679 975 Antisense
GCTCTTTCCACTTCATTTGCTGGAC 320 301 992 Antisense
TACTGGATCTCAATTCTCTACTCTT 517 647 1021 Antisense
TGTACGGCGTACACGCACTACCATA 22 555 1115 Antisense
TTCTGCATCCAACTTTATTCTCTAT 652 693 1146 Antisense
TCAGCTGCACAATGCTCCAGAGCGA 519 625 1185 Antisense
GACGAACACCCGACCTGAATATAGC 278 379 1260 Antisense
CGCAATACCATCCAGCAGTTGTCGC 665 251 1293 Antisense
ACAACACGGAATCTTTACCTCTGGC 38 109 1358 Antisense
TTCCAATGCCAATGTCTGCCAACGT 480 699 1427 Antisense
Sequence Source Affymetrix Proprietary Database