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[191806_s_at]

Description R13F6.6 /REP_DB=WormBase Gene ID /WP=CE25087 /TR=Q21982 /GB=AAC47046.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_high_8_8 > 33      6grp_highest_nonorm > 71      6grp_total > 22      4grp_total > 46      6grp_highest_sub > 02      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 544.1
(3)
P 		174.5
(-3)
P 		179.9
(-2.9)
P 		175.1
(-3)
A 		370
B 507.9
(3)
P 		314.9
(-0.5)
P 		178.6
(-3)
P 		234.9
(-2)
P 		329
C 631.9
(3)
P 		274.7
(-1.8)
P 		259.3
(-2)
P 		185.1
(-3)
P 		447
avr 561.3
(3) 		254.7
(-2.1) 		205.9
(-2.9) 		198.4
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 343.7
(1.2)
P 		410.7
(3)
P 		307
(0.1)
P 		362.3
(1.7)
P 		261.5
(-1.1)
P 		192.8
(-3)
P 		218
B 361.5
(1.5)
P 		395.6
(2.7)
P 		406.2
(3)
P 		282.3
(-1)
P 		241.4
(-2.4)
P 		221.9
(-3)
P 		184
C 322.4
(1.4)
P 		381
(3)
P 		355.8
(2.3)
P 		332.9
(1.7)
P 		221
(-1.5)
P 		166.1
(-3)
P 		215
avr 342.5
(1.4) 		395.8
(3) 		356.3
(1.8) 		325.8
(0.9) 		241.3
(-1.6) 		193.6
(-3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 198.1
(3)
P 		37.9
(-2.6)
P 		47
(-2.3)
P 		25.6
(-3)
A 		173
B 162
(3)
P 		77.8
(-1.2)
P 		41.4
(-3)
P 		50.1
(-2.6)
P 		121
C 209.2
(3)
P 		79
(-1.4)
P 		90.4
(-1)
P 		31.2
(-3)
P 		178
avr 189.8
(3) 		64.9
(-1.9) 		59.6
(-2.1) 		35.6
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 63.4
(-2)
P 		146.1
(3)
P 		66.9
(-1.8)
P 		91.9
(-0.3)
P 		78.9
(-1.1)
P 		46.9
(-3)
P 		99
B 125.8
(2.4)
P 		131.7
(3)
P 		98.6
(-0.5)
P 		74.8
(-3)
P 		98.1
(-0.5)
P 		82.7
(-2.2)
P 		57
C 119.5
(3)
P 		116.3
(2.7)
P 		90.6
(0.3)
P 		67
(-1.9)
P 		71.5
(-1.5)
P 		55.6
(-3)
P 		64
avr 102.9
(0.5) 		131.4
(3) 		85.4
(-1) 		77.9
(-1.6) 		82.8
(-1.2) 		61.7
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7278
Sequence Type Exemplar sequence
Representative Public ID R13F6.6 NCBI
Target Description R13F6.6 /REP_DB=WormBase Gene ID /WP=CE25087 /TR=Q21982 /GB=AAC47046.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181912(11), NM_066089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181912 NCBI Caenorhabditis elegans mammalian ZAK kinase homolog family member (zak-1) (zak-1) mRNA, complete cds. 11/11 None
NM_066089 NCBI Caenorhabditis elegans mammalian ZAK kinase homolog family member (zak-1) (zak-1) mRNA, complete cds. 11/11 None
SNAP00000003260 ENSEMBL cdna:SNAP chromosome:CEL140:III:6853233:6856737:-1 11/11 None
GENEFINDER00000003271 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6853233:6856737:-1 11/11 None
R13F6.6a ENSEMBL cdna:known chromosome:CEL140:III:6853060:6856715:-1 gene:R13F6.6 11/11 A 
R13F6.6b.1 ENSEMBL cdna:known chromosome:CEL140:III:6853233:6855530:-1 gene:R13F6.6 11/11 None
R13F6.6b.2 ENSEMBL cdna:known chromosome:CEL140:III:6853233:6855741:-1 gene:R13F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6853375-6857600(-) 100.0 100.0
Public Domain and Genome References
Ensembl R13F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_871641 mammalian ZAK kinase homolog family member (zak-1) [Caenorhabditis elegans] gb|AAN65305.1| Mammalian zak kinase homolog protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_498490 mammalian ZAK kinase homolog family member (zak-1) [Caenorhabditis elegans] gb|AAC47047.4| Mammalian zak kinase homolog protein 1, isoform a [Caenorhabditis elegans] 0.0
blast T16746 hypothetical protein R13F6.6 - Caenorhabditis elegans 0.0
blast CAE70100 Hypothetical protein CBG16544 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain 3.70000004768372
scop a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain 3.5
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-68
Pfam IPR000719 EMBL-EBI Protein kinase 2.5E-17
Sequence
Target Sequence 
>C. ELEGANS:191806_S_AT
aaacatgcgtcatcacttatcaagacagtttgcttttcagttcttgatgaaaacacaaag
aagccaatcaatgagccagcatgctcaatatctagtggaatgacaacaaatccagattgg
attactgtagatacggaggatgatgttaagattagagttatcgttagtgtatactacgca
gacattgtgactcaaccaagaaatacagaagtcataaaagttgtgacatcactagaagag
agtaagatacttgaagaacgccatgtccatttacgtctccgtagaagctcaagtagcgct
tcaatatcaacaccttccccagttattgctccagtttatcatccattcggtcatttaaat
aatggattccatcataccacgagctcccctcaacttcgaggatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACATGCGTCATCACTTATCAAGA 203 129 1534 Antisense
GACAGTTTGCTTTTCAGTTCTTGAT 277 369 1557 Antisense
GAAGCCAATCAATGAGCCAGCATGC 82 343 1593 Antisense
GCCAGCATGCTCAATATCTAGTGGA 506 279 1608 Antisense
GTATACTACGCAGACATTGTGACTC 696 453 1702 Antisense
AGAACGCCATGTCCATTTACGTCTC 595 73 1788 Antisense
TTACGTCTCCGTAGAAGCTCAAGTA 195 683 1804 Antisense
AGTAGCGCTTCAATATCAACACCTT 349 63 1825 Antisense
GTTATTGCTCCAGTTTATCATCCAT 616 447 1855 Antisense
GTTTATCATCCATTCGGTCATTTAA 549 449 1867 Antisense
AGCTCCCCTCAACTTCGAGGATTTT 309 81 1915 Antisense
Sequence Source Affymetrix Proprietary Database