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[191805_s_at] Thrombospondin type 1 domain

Description F23H12.5 /REP_DB=WormBase Gene ID /WP=CE05708 /TR=Q19764 /GB=CAA98943.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 54      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 894
1 2 3 4 range
A 189.1
(-2.1)
P 		694.1
(2.2)
P 		781.5
(3)
P 		91
(-3)
P 		691
B 197.2
(-1.5)
P 		619.2
(2.1)
P 		728.8
(3)
P 		21.5
(-3)
A 		707
C 206.5
(-2.2)
P 		588.4
(0.6)
P 		915.2
(3)
P 		102.4
(-3)
A 		813
avr 197.6
(-2) 		633.9
(1.6) 		808.5
(3) 		71.6
(-3) 		737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 481.8
(0.5)
P 		722.1
(3)
P 		474.3
(0.4)
P 		533
(1)
P 		311.3
(-1.3)
P 		146.9
(-3)
P 		575
B 371.6
(-0)
P 		615.7
(3)
P 		517.8
(1.8)
P 		435.4
(0.7)
P 		295.6
(-1)
P 		135.4
(-3)
P 		480
C 411.2
(0.2)
P 		672.2
(3)
P 		558.8
(1.8)
P 		525
(1.4)
P 		252.9
(-1.5)
P 		118.2
(-3)
P 		554
avr 421.5
(0.2) 		670
(3) 		517
(1.3) 		497.8
(1.1) 		286.6
(-1.3) 		133.5
(-3) 		537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 68.9
(-1.3)
P 		150.7
(1.3)
P 		204.3
(3)
P 		13.3
(-3)
P 		191
B 62.9
(-0.9)
P 		152.9
(2.4)
P 		168.9
(3)
P 		4.6
(-3)
A 		164
C 68.3
(-2)
P 		169.2
(0)
P 		319
(3)
P 		17.3
(-3)
A 		302
avr 66.7
(-1.5) 		157.6
(1) 		230.7
(3) 		11.7
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 88.8
(-1.6)
P 		256.8
(3)
P 		103.3
(-1.2)
P 		135.2
(-0.3)
P 		93.9
(-1.4)
P 		35.8
(-3)
P 		221
B 129.3
(0.1)
P 		205
(3)
P 		125.7
(-0.1)
P 		115.3
(-0.5)
P 		120.1
(-0.3)
P 		50.5
(-3)
P 		155
C 152.4
(1.1)
P 		205.1
(3)
P 		142.2
(0.7)
P 		105.6
(-0.6)
P 		81.8
(-1.5)
P 		39.6
(-3)
P 		166
avr 123.5
(-0.3) 		222.3
(3) 		123.7
(-0.3) 		118.7
(-0.4) 		98.6
(-1.1) 		42
(-3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191805_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14065
Sequence Type Exemplar sequence
Representative Public ID F23H12.5 NCBI
Target Description F23H12.5 /REP_DB=WormBase Gene ID /WP=CE05708 /TR=Q19764 /GB=CAA98943.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073695 NCBI Caenorhabditis elegans F23H12.5 (F23H12.5) mRNA, complete cds. 11/11 None
SNAP00000020013 ENSEMBL cdna:SNAP chromosome:CEL140:V:12361293:12365630:1 9/11 None
GENEFINDER00000020021 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12364571:12366012:1 11/11 None
F23H12.5 ENSEMBL cdna:known chromosome:CEL140:V:12361235:12366279:1 gene:F23H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12361292-12366012(+) 96.35 100.0
Public Domain and Genome References
Gene Title Thrombospondin type 1 domain
Ensembl F23H12.5
Entrez Gene 179695 Entrez gene
SwissProt Q19764 EMBL-EBI
WormBase CE05708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98943 Hypothetical protein F23H12.5 [Caenorhabditis elegans] ref|NP_506096.1| F23H12.5 [Caenorhabditis elegans] 0.0
blast CAE75464 Hypothetical protein CBG23464 [Caenorhabditis briggsae] 0.0
blast CAA98943 Hypothetical protein F23H12.5 [Caenorhabditis elegans] ref|NP_506096.1| F23H12.5 [Caenorhabditis elegans] 1.0E-125
blast CAE75464 Hypothetical protein CBG23464 [Caenorhabditis briggsae] 6.0E-63
Sequence
Target Sequence 
>C. ELEGANS:191805_S_AT
gtgacacggctagagcactttcatggatgattaatgatatggaaagaatggtagatgata
aaacaaaaactgaagtttctgatcaattacctgtcgagaaaattgaagaagaaccaattg
gattcaggataggagattttgaatccgatgaaacaacaactacagtaagcccattcccat
tcccaattcctgaaaatggatttgctctgattcgatccaagcgtgatgcttcaactcaat
tcaaaaatggaaagaaagttatctggtctccatggagcgagtggaccaagtgtcaatgcg
gcaaacaatctcggaaacgaaagtgtctcaaatatcttggcggttcaaagtatgcgtacg
atgatcaaaagttcattccaattgaccaatctacaaacgatattgaatttggtgaaccag
cagaatttccagaagaacttgaagaaccagctccgatggatagtcaagaatatgagaact
taaatcgagtaaaaagatcactaaaatgcccatcacctcagattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACACGGCTAGAGCACTTTCATG 595 481 1865 Antisense
GAAGTTTCTGATCAATTACCTGTCG 18 337 1936 Antisense
ACAACAACTACAGTAAGCCCATTCC 589 111 2017 Antisense
GGATTTGCTCTGATTCGATCCAAGC 64 511 2062 Antisense
AAGCGTGATGCTTCAACTCAATTCA 154 149 2083 Antisense
GGTCTCCATGGAGCGAGTGGACCAA 342 501 2129 Antisense
GTCAATGCGGCAAACAATCTCGGAA 381 463 2156 Antisense
GTGTCTCAAATATCTTGGCGGTTCA 222 485 2187 Antisense
TTGGCGGTTCAAAGTATGCGTACGA 682 705 2201 Antisense
AGAACTTGAAGAACCAGCTCCGATG 619 73 2298 Antisense
TAAAATGCCCATCACCTCAGATTGA 374 639 2366 Antisense
Sequence Source Affymetrix Proprietary Database