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[191803_s_at] Protein phosphatase-1 (PP1) /// Protein phosphatase-1 (PP1)

Description C24H11.1 /REP_DB=WormBase Gene ID /WP=CE18524 /TR=Q9U3P4 /GB=CAB03912.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase-1 (PP1)
Cluster 6grp_total > 97      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 9.1
(3)
A 		2.4
(-3)
A 		7.4
(1.5)
A 		5.9
(0.1)
A 		7
B 7.1
(3)
A 		6.2
(1.9)
A 		2.3
(-3)
A 		6.5
(2.3)
A 		5
C 9.9
(-2.5)
A 		13.7
(-1.8)
A 		7.5
(-3)
A 		39.2
(3)
A 		32
avr 8.7
(-1.4) 		7.4
(-2.1) 		5.7
(-3) 		17.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 9.9
(-2.8)
A 		6.7
(-3)
A 		17.1
(-2.3)
A 		13.3
(-2.5)
A 		62.6
(0.9)
A 		93.6
(3)
P 		87
B 9.1
(-2.6)
A 		3.2
(-3)
A 		20.4
(-1.7)
A 		33.4
(-0.8)
A 		46.6
(0.2)
A 		84.8
(3)
P 		82
C 3.8
(-3)
A 		8
(-2.7)
A 		28.4
(-1.1)
A 		4.7
(-2.9)
A 		53.8
(0.8)
A 		82.5
(3)
P 		79
avr 7.6
(-2.9) 		6
(-3) 		22
(-1.8) 		17.1
(-2.2) 		54.3
(0.6) 		87
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.3
(3)
A 		0.5
(-3)
A 		1.9
(-0)
A 		0.9
(-2.1)
A 		3
B 2.3
(3)
A 		1.5
(0.3)
A 		0.5
(-3)
A 		1.4
(0)
A 		2
C 3.3
(-2)
A 		3.9
(-1.1)
A 		2.6
(-3)
A 		6.6
(3)
A 		4
avr 3
(3) 		2
(-1.6) 		1.7
(-3) 		3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.8
(-3)
A 		2.4
(-2.8)
A 		3.7
(-2.5)
A 		3.4
(-2.5)
A 		18.9
(1.9)
A 		22.8
(3)
P 		21
B 3.2
(-2.6)
A 		1.1
(-3)
A 		5
(-2.2)
A 		8.8
(-1.5)
A 		18.9
(0.5)
A 		31.6
(3)
P 		31
C 1.4
(-2.9)
A 		2.4
(-2.7)
A 		7.2
(-1.6)
A 		0.9
(-3)
A 		17.4
(0.7)
A 		27.6
(3)
P 		27
avr 2.1
(-3) 		2
(-3) 		5.3
(-2.2) 		4.4
(-2.4) 		18.4
(0.9) 		27.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191803_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7172
Sequence Type Exemplar sequence
Representative Public ID C24H11.1 NCBI
Target Description C24H11.1 /REP_DB=WormBase Gene ID /WP=CE18524 /TR=Q9U3P4 /GB=CAB03912.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase-1 (PP1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067126(11), NM_067127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067126 NCBI Caenorhabditis elegans C24H11.1 (C24H11.1) mRNA, complete cds. 11/11 None
NM_067127 NCBI Caenorhabditis elegans C24H11.2 (C24H11.2) mRNA, complete cds. 11/11 None
SNAP00000008945 ENSEMBL cdna:SNAP chromosome:CEL140:III:11787707:11789333:1 11/11 None
GENEFINDER00000008953 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11787725:11789333:1 11/11 None
SNAP00000008946 ENSEMBL cdna:SNAP chromosome:CEL140:III:11790412:11792121:-1 11/11 None
GENEFINDER00000008951 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11790412:11792121:-1 11/11 None
C24H11.1 ENSEMBL cdna:known chromosome:CEL140:III:11787624:11789333:1 gene:C24H11.1 11/11 None
C24H11.2 ENSEMBL cdna:known chromosome:CEL140:III:11790412:11792121:-1 gene:C24H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11787619-11789329(+) 100.0 100.0
chrIII:11790407-11792117(-) 99.91 99.91
Public Domain and Genome References
Gene Title Protein phosphatase-1 (PP1)
Protein phosphatase-1 (PP1)
Ensembl C24H11.1
C24H11.2
Entrez Gene 182859 Entrez gene
182860 Entrez gene
SwissProt Q9U3P4 EMBL-EBI
Q9XVD6 EMBL-EBI
WormBase CE18524 Wormbase
CE18525 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03912 Hypothetical protein C24H11.1 [Caenorhabditis elegans] ref|NP_499527.1| C24H11.1 [Caenorhabditis elegans] 0.0
blast CAB03908 Hypothetical protein C24H11.2 [Caenorhabditis elegans] ref|NP_499528.1| C24H11.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.8E-40
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.8E-40
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.8E-40
Sequence
Target Sequence 
>C. ELEGANS:191803_S_AT
atcggtttacaatcacttcaatcaagtcttctcgtatatgcccctgtgtgcaatcgtctc
gaagcgtattctctgcatgcacggagggatttctccacatttgaagtctctcgatgatat
tcgtgcaatcccattgccactggaaactgcaaagactcatcctctcgcttgtgacttgct
gtgggcagaccctgaaaaggatgccaaaggctttgagcccaacaagatccgtgcaatctc
gaacgtctttggaaagaaggaggttgatgatttgtgcaagagattggatatcgatttgat
tgtcagagctcatcaggtggtcgagtacgggtatgcattcttcgctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGTTTACAATCACTTCAATCAA 517 33 630 Antisense
CAATCAAGTCTTCTCGTATATGCCC 187 181 648 Antisense
CGTATATGCCCCTGTGTGCAATCGT 685 245 662 Antisense
GTCTCGAAGCGTATTCTCTGCATGC 386 471 685 Antisense
GGGATTTCTCCACATTTGAAGTCTC 208 497 715 Antisense
GGAAACTGCAAAGACTCATCCTCTC 536 527 771 Antisense
GACTTGCTGTGGGCAGACCCTGAAA 183 371 802 Antisense
AAGGCTTTGAGCCCAACAAGATCCG 87 161 836 Antisense
GTGCAATCTCGAACGTCTTTGGAAA 667 479 860 Antisense
GTCAGAGCTCATCAGGTGGTCGAGT 287 465 931 Antisense
GTACGGGTATGCATTCTTCGCTGAT 354 459 954 Antisense
Sequence Source Affymetrix Proprietary Database