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[191802_at] phosphatidylserine synthase I

Description ZC506.3 /REP_DB=WormBase Gene ID /WP=CE01681 /TR=Q09643 /GB=CAA87373.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphatidylserine synthase I
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 634
1 2 3 4 range
A 1016.7
(3)
P 		653
(-0.4)
P 		722.4
(0.2)
P 		382.5
(-3)
P 		634
B 906.8
(3)
P 		596.7
(-0.6)
P 		658.2
(0.1)
P 		392.6
(-3)
P 		514
C 842.7
(3)
P 		644.8
(0.3)
P 		742.1
(1.6)
P 		395.9
(-3)
P 		447
avr 922.1
(3) 		631.5
(-0.3) 		707.6
(0.6) 		390.3
(-3) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 817.8
(3)
P 		597.7
(-0.3)
P 		461.8
(-2.3)
P 		504.2
(-1.7)
P 		416.3
(-3)
P 		416.5
(-3)
P 		402
B 907.3
(3)
P 		762.8
(1.2)
P 		556.8
(-1.4)
P 		510.2
(-2)
P 		485.4
(-2.3)
P 		429.7
(-3)
P 		478
C 865.6
(3)
P 		654.3
(0.4)
P 		571.6
(-0.7)
P 		539.6
(-1.1)
P 		384.1
(-3)
P 		425
(-2.5)
P 		482
avr 863.6
(3) 		671.6
(0.4) 		530.1
(-1.5) 		518
(-1.7) 		428.6
(-2.9) 		423.7
(-3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 370.2
(3)
P 		141.7
(-1.4)
P 		188.8
(-0.5)
P 		56
(-3)
P 		314
B 289.2
(3)
P 		147.4
(-1.1)
P 		152.5
(-1)
P 		83.7
(-3)
P 		206
C 279
(3)
P 		185.4
(0.4)
P 		258.7
(2.4)
P 		66.8
(-3)
P 		212
avr 312.8
(3) 		158.2
(-0.8) 		200
(0.2) 		68.8
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 150.8
(-0.3)
P 		212.6
(3)
P 		100.6
(-3)
P 		127.9
(-1.5)
P 		125.6
(-1.7)
P 		101.4
(-3)
P 		112
B 315.7
(3)
P 		253.9
(0.9)
P 		135.2
(-3)
P 		135.1
(-3)
P 		197.2
(-0.9)
P 		160.2
(-2.2)
P 		181
C 320.8
(3)
P 		199.7
(-0.4)
P 		145.5
(-2)
P 		108.5
(-3)
P 		124.3
(-2.6)
P 		142.3
(-2)
P 		212
avr 262.4
(3) 		222.1
(1.3) 		127.1
(-2.9) 		123.8
(-3) 		149
(-1.9) 		134.6
(-2.5) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16265
Sequence Type Exemplar sequence
Representative Public ID ZC506.3 NCBI
Target Description ZC506.3 /REP_DB=WormBase Gene ID /WP=CE01681 /TR=Q09643 /GB=CAA87373.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=phosphatidylserine synthase I
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077272 NCBI Caenorhabditis elegans ZC506.3 (ZC506.3) mRNA, complete cds. 11/11 None
SNAP00000023345 ENSEMBL cdna:SNAP chromosome:CEL140:X:9965529:9968138:1 11/11 None
GENEFINDER00000023349 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9965529:9968138:1 11/11 None
ZC506.3.3 ENSEMBL cdna:known chromosome:CEL140:X:9965425:9968498:1 gene:ZC506.3 11/11 None
ZC506.3.2 ENSEMBL cdna:known chromosome:CEL140:X:9965522:9968506:1 gene:ZC506.3 11/11 None
ZC506.3.1 ENSEMBL cdna:known chromosome:CEL140:X:9965529:9968506:1 gene:ZC506.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9965528-9968138(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphatidylserine synthase I
Ensembl ZC506.3
Entrez Gene 181211 Entrez gene
SwissProt Q09643 EMBL-EBI
WormBase CE01681 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14908.1.S1_AT similar to Phosphatidylserine synthase I (PtdSer synthase-1) (PSS-1) (Serine-exchange enzyme I) cfa
DROSOPHILA_2:1628240_AT dm
DROSGENOME1:149137_AT dm
CHICKEN:GGAAFFX.10193.1.S1_S_AT phosphatidylserine synthase 1 gga
CHICKEN:GGAAFFX.21515.1.S1_S_AT phosphatidylserine synthase 1 gga
HG-U133A:201433_S_AT phosphatidylserine synthase 1 hs
HG-U133_PLUS_2:201433_S_AT phosphatidylserine synthase 1 hs
HG-FOCUS:201433_S_AT phosphatidylserine synthase 1 hs
HG-U133A_2:201433_S_AT phosphatidylserine synthase 1 hs
HG-U95AV2:37320_AT phosphatidylserine synthase 1 hs
HUGENEFL:D14694_AT phosphatidylserine synthase 1 hs
U133_X3P:G7662646_3P_A_AT phosphatidylserine synthase 1 hs
MOUSE430A_2:1441866_S_AT phosphatidylserine synthase 1 mm
MOE430A:1441866_S_AT phosphatidylserine synthase 1 mm
MOUSE430_2:1441866_S_AT phosphatidylserine synthase 1 mm
MU11KSUBB:MSA.12566.0_AT phosphatidylserine synthase 1 mm
MG-U74AV2:101931_AT phosphatidylserine synthase 1 mm
MG-U74AV2:161864_F_AT phosphatidylserine synthase 1 mm
MOE430A:1416372_AT phosphatidylserine synthase 1 mm
MOUSE430A_2:1416372_AT phosphatidylserine synthase 1 mm
MOUSE430_2:1416372_AT phosphatidylserine synthase 1 mm
MOE430A:1449739_AT Phosphatidylserine synthase 1, mRNA (cDNA clone MGC:5814 IMAGE:3501141) mm
MOUSE430A_2:1449739_AT Phosphatidylserine synthase 1, mRNA (cDNA clone MGC:5814 IMAGE:3501141) mm
MOUSE430_2:1449739_AT Phosphatidylserine synthase 1, mRNA (cDNA clone MGC:5814 IMAGE:3501141) mm
MU11KSUBA:AA277363_AT Phosphatidylserine synthase 1, mRNA (cDNA clone MGC:5814 IMAGE:3501141) mm
MU19KSUBC:TC41376_AT Phosphatidylserine synthase 1, mRNA (cDNA clone MGC:5814 IMAGE:3501141) mm
RG-U34C:RC_AI177921_AT phosphatidylserine synthase 1 (predicted) rn
RAE230A:1367497_AT phosphatidylserine synthase 1 (predicted) rn
RAE230B:1367497_AT phosphatidylserine synthase 1 (predicted) rn
RAT230_2:1367497_AT phosphatidylserine synthase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6659 phosphatidylserine biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87373 Hypothetical protein ZC506.3 [Caenorhabditis elegans] ref|NP_509673.1| ZC506.3 [Caenorhabditis elegans] 0.0
blast CAE58758 Hypothetical protein CBG01950 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004277 EMBL-EBI Phosphatidyl serine synthase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509673.1 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
ZC506.3.3 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
ZC506.3.2 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
ZC506.3.1 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
SNAP00000023345 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
GENEFINDER00000023349 9 93-112,125-147,151-173,233-255,270-292,341-358,371-393,406-428,433-455
Sequence
Target Sequence 
>C. ELEGANS:191802_AT
gattggggatccttcacagtaacgattaagagaacaatgtcggtttatgtttttgttctg
atttggttgctaaccgagctgaacacattcttcatgaaacacgtgttttctgtggacaca
aaacatccagttgtcttttggagacttattctcattgcatttatctctgctccttcaatt
cgtcaattttacctctacgctacggatcctctaatcaagcgtcttggtatgcaatgctgg
gtgtatttggcagtgtgtgcattggaagcggccatttgtgttaagtttggtatccacatg
ttcccacgagtagcgattacgccgattgttatttggattttgttcttgattgttggtaca
ttcttcagcgtttggttctcggtgtggtgggcaaagcgttcttcagctactactgaaatt
gagatcgacggcgagaactgtgacatttatctagattcgtcacatgaaaacctcggggca
attcacgatgatgttcgtcgcagacgccgagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGGATCCTTCACAGTAACGA 495 433 994 Antisense
GCTAACCGAGCTGAACACATTCTTC 77 301 1062 Antisense
TCTCATTGCATTTATCTCTGCTCCT 362 613 1143 Antisense
CAATTTTACCTCTACGCTACGGATC 504 177 1177 Antisense
GGATCCTCTAATCAAGCGTCTTGGT 345 509 1197 Antisense
AAGTTTGGTATCCACATGTTCCCAC 372 157 1276 Antisense
TGTTCCCACGAGTAGCGATTACGCC 176 563 1292 Antisense
GTACATTCTTCAGCGTTTGGTTCTC 229 461 1349 Antisense
GGTTCTCGGTGTGGTGGGCAAAGCG 490 507 1367 Antisense
GCAAAGCGTTCTTCAGCTACTACTG 646 317 1384 Antisense
TGATGTTCGTCGCAGACGCCGAGAT 100 567 1482 Antisense
Sequence Source Affymetrix Proprietary Database