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[191800_at] UDP-glucuronosyltransferase

Description F01E11.1 /REP_DB=WormBase Gene ID /WP=CE04327 /TR=Q19082 /GB=AAA83572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 50      6grp_cgc > 10      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 940
1 2 3 4 range
A 252.7
(-2.1)
P 		993.4
(3)
P 		645.4
(0.6)
P 		116
(-3)
A 		877
B 305.4
(-1.3)
P 		949.7
(3)
P 		737.4
(1.6)
P 		53.4
(-3)
A 		896
C 278.4
(-1.5)
P 		944.3
(3)
P 		780.3
(1.9)
P 		64.4
(-3)
A 		880
avr 278.8
(-1.6) 		962.5
(3) 		721
(1.4) 		77.9
(-3) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1188
1 2 3 4 5 6 range
A 1253.8
(3)
P 		591.1
(-0.7)
P 		589.3
(-0.7)
P 		500.6
(-1.2)
P 		356.9
(-2)
P 		183.2
(-3)
P 		1071
B 1356.1
(3)
P 		591.2
(-0.9)
P 		704.7
(-0.4)
P 		660.8
(-0.6)
P 		307.3
(-2.4)
P 		193.4
(-3)
P 		1163
C 1112.6
(3)
P 		598.6
(-0.3)
P 		666.8
(0.2)
P 		605.4
(-0.2)
P 		308.9
(-2.1)
P 		168.6
(-3)
P 		944
avr 1240.8
(3) 		593.6
(-0.7) 		653.6
(-0.3) 		588.9
(-0.7) 		324.4
(-2.2) 		181.7
(-3) 		1059
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 92
(-0.7)
P 		215.6
(3)
P 		168.7
(1.6)
P 		17
(-3)
A 		199
B 97.4
(-0.7)
P 		234.6
(3)
P 		170.9
(1.3)
P 		11.4
(-3)
A 		223
C 92.2
(-1.1)
P 		271.5
(3)
P 		272
(3)
P 		10.9
(-3)
A 		261
avr 93.9
(-0.9) 		240.6
(3) 		203.9
(2) 		13.1
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 231.1
(3)
P 		210.2
(2.3)
P 		128.3
(-0.3)
P 		127
(-0.3)
P 		107.7
(-1)
P 		44.6
(-3)
P 		187
B 471.9
(3)
P 		196.8
(-1.1)
P 		171.1
(-1.5)
P 		175
(-1.5)
P 		124.8
(-2.2)
P 		72.1
(-3)
P 		400
C 412.4
(3)
P 		182.6
(-0.9)
P 		169.7
(-1.1)
P 		121.8
(-1.9)
P 		99.9
(-2.3)
P 		56.4
(-3)
P 		356
avr 371.8
(3) 		196.5
(-0.3) 		156.4
(-1.1) 		141.3
(-1.4) 		110.8
(-2) 		57.7
(-3) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16913
Sequence Type Exemplar sequence
Representative Public ID F01E11.1 NCBI
Target Description F01E11.1 /REP_DB=WormBase Gene ID /WP=CE04327 /TR=Q19082 /GB=AAA83572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076781 NCBI Caenorhabditis elegans F01E11.1 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000033564 ENSEMBL cdna:SNAP chromosome:CEL140:X:6991797:6993963:1 11/11 None
GENEFINDER00000033568 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6991797:6993963:1 11/11 None
F01E11.1 ENSEMBL cdna:known chromosome:CEL140:X:6991705:6994099:1 gene:F01E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6991796-6993963(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-57
Ensembl F01E11.1
Entrez Gene 180969 Entrez gene
SwissProt Q19082 EMBL-EBI
WormBase CE04327 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83572 Udp-glucuronosyltransferase protein 57 [Caenorhabditis elegans] ref|NP_509182.1| F01E11.1 [Caenorhabditis elegans] 0.0
blast CAE65828 Hypothetical protein CBG10950 [Caenorhabditis briggsae] 0.0
blast AAK16234 UDP-galactose ceramide galactosyltransferase [Gallus gallus] ref|NP_989535.1| UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) [Gallus gallus] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509182.1 2 5-27,505-527
F01E11.1 2 5-27,505-527
SNAP00000033564 2 5-27,505-527
GENEFINDER00000033568 2 5-27,505-527
Sequence
Target Sequence 
>C. ELEGANS:191800_AT
tcaacttgacgactttcattccacaaaatgatcttcttgcccacaaatcctgcaaacttt
ttgtaacgaatggtggaatgtcatctgtcatggaagctgttgctcatggagttccaattg
ttggagtaccattatacggatctaatagatacaatttacaaaaggtttcaaacaagggtc
ttggtattgtcattgataaagacgatcttaatgaaatttcactgtatggagcaatgaaaa
aggttttagagtctgcaaaatacaagaacactgcaaaggaaatgtcaaaagaattcaaat
cccgaaccactagcccatttgctgctgcacttcatgttattgatcacattggacgtcatc
attcatttgcatacatgcaacctgcctttcagccaatttacacacgtgtcgacttttatc
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTTGACGACTTTCATTCCACA 76 631 1112 Antisense
CCACAAAATGATCTTCTTGCCCACA 406 275 1132 Antisense
TCTTGCCCACAAATCCTGCAAACTT 82 619 1146 Antisense
GAATGTCATCTGTCATGGAAGCTGT 516 331 1187 Antisense
GAAGCTGTTGCTCATGGAGTTCCAA 693 341 1204 Antisense
AGAATTCAAATCCCGAACCACTAGC 361 75 1401 Antisense
GTTATTGATCACATTGGACGTCATC 72 449 1447 Antisense
ACGTCATCATTCATTTGCATACATG 80 95 1464 Antisense
TGCATACATGCAACCTGCCTTTCAG 64 579 1479 Antisense
ACCTGCCTTTCAGCCAATTTACACA 561 87 1491 Antisense
TACACACGTGTCGACTTTTATCTCC 268 643 1510 Antisense
Sequence Source Affymetrix Proprietary Database