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[191794_at] Glycosyl hydrolases family 18

Description M01B2.6 /REP_DB=WormBase Gene ID /WP=CE20016 /TR=Q9XU76 /GB=CAB05568.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glycosyl hydrolases family 18
Cluster 6grp_total > 30      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 102.1
(3)
P 		13.4
(-2.8)
A 		10.9
(-3)
A 		45.2
(-0.7)
A 		91
B 110.9
(3)
M 		36.1
(-1.2)
A 		3.6
(-3)
A 		33.5
(-1.3)
A 		107
C 117.9
(3)
M 		71.3
(0.2)
A 		35.8
(-1.9)
A 		16.8
(-3)
A 		101
avr 110.3
(3) 		40.3
(-1.5) 		16.8
(-3) 		31.8
(-2) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 122.8
(0.4)
P 		168.9
(2.4)
P 		184.2
(3)
P 		179.7
(2.8)
P 		119.6
(0.3)
A 		40.6
(-3)
A 		144
B 145.6
(0.6)
M 		213.3
(3)
P 		166.1
(1.3)
P 		150.5
(0.8)
A 		171.9
(1.5)
P 		42.4
(-3)
A 		171
C 133.4
(0.3)
P 		212.8
(3)
P 		154.2
(1)
P 		198
(2.5)
M 		109
(-0.5)
A 		33.1
(-3)
A 		180
avr 133.9
(0.6) 		198.3
(3) 		168.2
(1.9) 		176.1
(2.2) 		133.5
(0.6) 		38.7
(-3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 37.2
(3)
P 		2.9
(-3)
A 		2.8
(-3)
A 		6.6
(-2.3)
A 		34
B 35.4
(3)
M 		8.9
(-1.6)
A 		0.8
(-3)
A 		7.1
(-1.9)
A 		35
C 39
(3)
M 		20.5
(-0.1)
A 		12.5
(-1.4)
A 		2.8
(-3)
A 		36
avr 37.2
(3) 		10.8
(-2) 		5.4
(-3) 		5.5
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 22.6
(-1.5)
P 		60.1
(3)
P 		40.1
(0.6)
P 		45.6
(1.3)
P 		36.1
(0.1)
A 		9.9
(-3)
A 		50
B 50.7
(0.8)
M 		71
(3)
P 		40.3
(-0.3)
P 		39.9
(-0.4)
A 		69.8
(2.9)
P 		15.8
(-3)
A 		55
C 49.5
(1.3)
P 		64.9
(3)
P 		39.2
(0.1)
P 		39.8
(0.2)
M 		35.3
(-0.3)
A 		11.1
(-3)
A 		54
avr 40.9
(0.2) 		65.3
(3) 		39.9
(0.1) 		41.8
(0.3) 		47.1
(0.9) 		12.3
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14180
Sequence Type Exemplar sequence
Representative Public ID M01B2.6 NCBI
Target Description M01B2.6 /REP_DB=WormBase Gene ID /WP=CE20016 /TR=Q9XU76 /GB=CAB05568.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glycosyl hydrolases family 18
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074369 NCBI Caenorhabditis elegans M01B2.6 (M01B2.6) mRNA, complete cds. 11/11 None
SNAP00000027835 ENSEMBL cdna:SNAP chromosome:CEL140:V:15245918:15246529:1 11/11 None
GENEFINDER00000027844 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15244170:15249687:1 10/11 None
M01B2.6 ENSEMBL cdna:known chromosome:CEL140:V:15244170:15246529:1 gene:M01B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15244169-15246529(+) 97.85 100.0
Public Domain and Genome References
Gene Title Glycosyl hydrolases family 18
Ensembl M01B2.6
Entrez Gene 187357 Entrez gene
SwissProt Q9XU76 EMBL-EBI
WormBase CE34579 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05568 Hypothetical protein M01B2.6 [Caenorhabditis elegans] ref|NP_506770.2| M01B2.6 [Caenorhabditis elegans] 0.0
blast CAB05559 Hypothetical protein M01B2.1 [Caenorhabditis elegans] ref|NP_506771.2| protein KINase family member (kin-30) [Caenorhabditis elegans] 0.0
blast CAA93871 Hypothetical protein R09D1.12 [Caenorhabditis elegans] ref|NP_496025.1| R09D1.12 [Caenorhabditis elegans] 1.0E-123
blast CAB05568 Hypothetical protein M01B2.6 [Caenorhabditis elegans] ref|NP_506770.2| M01B2.6 [Caenorhabditis elegans] 1.0E-118
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 1.0E-115
blast CAE71748 Hypothetical protein CBG18734 [Caenorhabditis briggsae] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.7E-108
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.2E-55
Pfam IPR000719 EMBL-EBI Protein kinase 4.5E-42
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.7E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506770.2 1 28-50
M01B2.6 1 28-50
GENEFINDER00000027844 2 30-52,484-506
Sequence
Target Sequence 
>C. ELEGANS:191794_AT
tgcaatggactactatggcccttgggctagtggatggggcaatcccacgggaccaatttc
accaatttacggtggaagtgaacgaagagagcagtggaatgttgataatacagcagcaat
ttattcctgcgaaacaatgagatcgagcaaatttaatattgtgattccctttttcgcgag
actttggaataatgtcggaaaacccatcgattttcccggaaaagaagtttatagaaacgt
gactcttattgatggaaaagcagttggagaggtttatatgccgagacggtctgcactaca
aaaaggatacaatctatcatcgtacaattatgatgacctatctgaaactgcatttatcta
caattcaacgacaaaagaatatctaacttttgaagtgaaaaggagcattgctgcgaaact
cgactatgtgcaaaatatgaatttgggaggagtttggatttggcaaatggacatggatga
tgaatctgataaattgttggatacagttgtatttgacgatgggttttgtagcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATGGACTACTATGGCCCTTGG 52 577 882 Antisense
ATGGCCCTTGGGCTAGTGGATGGGG 349 49 896 Antisense
AGTGGATGGGGCAATCCCACGGGAC 272 59 910 Antisense
GCAATCCCACGGGACCAATTTCACC 489 319 920 Antisense
AATATTGTGATTCCCTTTTTCGCGA 189 175 1036 Antisense
GAAACGTGACTCTTATTGATGGAAA 486 355 1115 Antisense
GAGAGGTTTATATGCCGAGACGGTC 302 389 1148 Antisense
CCGAGACGGTCTGCACTACAAAAAG 22 263 1162 Antisense
GACCTATCTGAAACTGCATTTATCT 377 383 1216 Antisense
GGAGCATTGCTGCGAAACTCGACTA 454 521 1283 Antisense
TTGACGATGGGTTTTGTAGCACCAA 102 705 1394 Antisense
Sequence Source Affymetrix Proprietary Database