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[191791_at] 7TM chemoreceptor, srh family

Description F47C12.10 /REP_DB=WormBase Gene ID /WP=CE28396 /GEN=srh-222 /TR=O76829 /GB=AAC24395.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 90      4grp_total > 03      6grp_cgc > 09      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 68.2
(-1.9)
A 		55.9
(-2.5)
A 		45.4
(-3)
A 		172.5
(3)
A 		127
B 34.5
(0.5)
A 		19.7
(-3)
A 		23.9
(-2)
A 		45.2
(3)
A 		26
C 31.6
(-3)
A 		46.3
(-1.4)
A 		40.2
(-2.1)
A 		87.8
(3)
A 		56
avr 44.8
(-2.2) 		40.6
(-2.6) 		36.5
(-3) 		101.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 59.4
(1.7)
A 		43.1
(0.2)
A 		10.4
(-3)
A 		38.1
(-0.3)
A 		49.7
(0.8)
A 		72.6
(3)
A 		62
B 68.8
(3)
A 		63
(1.8)
A 		38.8
(-3)
A 		65.5
(2.3)
A 		50.1
(-0.7)
A 		45.4
(-1.7)
A 		30
C 32.1
(-0.5)
A 		73.5
(2.9)
A 		2
(-3)
A 		74.8
(3)
A 		22.2
(-1.3)
A 		27
(-0.9)
A 		73
avr 53.4
(2.1) 		59.9
(3) 		17.1
(-3) 		59.5
(2.9) 		40.7
(0.3) 		48.3
(1.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.8
(2.8)
A 		12.1
(-2.9)
A 		11.9
(-3)
A 		25.3
(3)
A 		13
B 11
(3)
A 		4.9
(-3)
A 		5.5
(-2.4)
A 		9.6
(1.6)
A 		6
C 10.5
(-3)
A 		13.3
(0.9)
A 		14
(1.9)
A 		14.8
(3)
A 		4
avr 15.4
(1.9) 		10.1
(-3) 		10.5
(-2.6) 		16.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11
(0.4)
A 		15.3
(2.1)
A 		2.3
(-3)
A 		9.7
(-0.1)
A 		15
(1.9)
A 		17.7
(3)
A 		15
B 23.9
(3)
A 		21
(1.8)
A 		9.4
(-3)
A 		17.4
(0.3)
A 		20.4
(1.6)
A 		16.9
(0.1)
A 		15
C 11.9
(0.1)
A 		22.4
(3)
A 		0.5
(-3)
A 		15
(1)
A 		7.2
(-1.2)
A 		9
(-0.7)
A 		22
avr 15.6
(1.5) 		19.6
(3) 		4.1
(-3) 		14
(0.8) 		14.2
(0.9) 		14.5
(1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10677
Sequence Type Exemplar sequence
Representative Public ID F47C12.10 NCBI
Target Description F47C12.10 /REP_DB=WormBase Gene ID /WP=CE28396 /GEN=srh-222 /TR=O76829 /GB=AAC24395.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068051 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-222) (srh-222) mRNA, complete cds. 11/11 None
SNAP00000026880 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3979819:3981199:1 11/11 None
F47C12.10 ENSEMBL cdna:known chromosome:CEL140:IV:3979819:3981199:1 gene:F47C12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3979824-3981205(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-222
Ensembl F47C12.10
Entrez Gene 185921 Entrez gene
SwissProt O76829 EMBL-EBI
WormBase CE28396 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24395 Serpentine receptor, class h protein 222 [Caenorhabditis elegans] ref|NP_500452.1| Serpentine Receptor, class H family member (srh-222) [Caenorhabditis elegans] 1.0E-174
blast AAC24394 Serpentine receptor, class h protein 223 [Caenorhabditis elegans] ref|NP_500453.1| Serpentine Receptor, class H family member (srh-223) [Caenorhabditis elegans] 1.0E-135
blast AAC24387 Serpentine receptor, class h protein 220 [Caenorhabditis elegans] ref|NP_500451.1| Serpentine Receptor, class H family member (srh-220) [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500452.1 7 24-46,67-89,104-123,144-163,201-223,244-266,276-298
F47C12.10 7 24-46,67-89,104-123,144-163,201-223,244-266,276-298
SNAP00000026880 7 24-46,67-89,104-123,144-163,201-223,244-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:191791_AT
ggagaagaattcgcatcccttttctcgtttttcaacactttacagcaatcatgtattttt
atccaatttataggacaatgccgcctggtcccgagaatcagaaagaattcattttaaagg
cgatcccgtgtcttcatccagatgtacgtaatgctccattatacctggtcgtcgaggaca
ggtggaaattcttgagttggacagtagctgaagctcttctagtagctttgacactccagg
gaatatttatttttattatcaaatctctcagaagttacggtcaaaatcgatccaacaaaa
ccgtcgatctgcagaagaagctcctgcgagccatatcaattcagttagcccttccatttt
gtataatatttatacctctatgctactatacgttttccacatcttaccgtgcagctatta
acaatttgatgtacgtattgatgtcaacccatggactattttcaacagttgtgatgatta
tcgtgcagaaaccatatcgagaatttcttctggctttacttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGAATTCGCATCCCTTTTCT 354 517 254 Antisense
TTATAGGACAATGCCGCCTGGTCCC 437 679 321 Antisense
TTTTAAAGGCGATCCCGTGTCTTCA 419 667 365 Antisense
CTCCATTATACCTGGTCGTCGAGGA 660 233 407 Antisense
GTAGCTTTGACACTCCAGGGAATAT 578 457 475 Antisense
GAAGAAGCTCCTGCGAGCCATATCA 172 339 567 Antisense
GAGCCATATCAATTCAGTTAGCCCT 603 385 581 Antisense
TCAGTTAGCCCTTCCATTTTGTATA 471 623 594 Antisense
GCTACTATACGTTTTCCACATCTTA 228 303 635 Antisense
CACATCTTACCGTGCAGCTATTAAC 470 195 651 Antisense
GAATTTCTTCTGGCTTTACTTTTAT 212 325 754 Antisense
Sequence Source Affymetrix Proprietary Database