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[191790_at] C.elegans ZYG-11 protein like

Description F58D2.1 /REP_DB=WormBase Gene ID /WP=CE18782 /TR=Q9XVM3 /GB=CAB03146.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 protein like
Cluster 6grp_total > 56      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 2.8
(-3)
A 		10.7
(-2)
A 		7.4
(-2.4)
A 		51.3
(3)
A 		49
B 7
(-3)
A 		33.7
(0.5)
A 		25.8
(-0.6)
A 		53.2
(3)
A 		46
C 10
(-3)
A 		25
(-1.5)
A 		26.4
(-1.3)
A 		68.8
(3)
A 		59
avr 6.6
(-3) 		23.1
(-1.1) 		19.9
(-1.4) 		57.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 27
(2.4)
A 		13.4
(-3)
A 		19.5
(-0.6)
A 		28.5
(3)
A 		20
(-0.4)
A 		22.6
(0.7)
A 		15
B 22.4
(1)
A 		3.1
(-3)
A 		17.8
(0)
A 		2.9
(-3)
A 		3
(-3)
A 		32.4
(3)
A 		30
C 13.6
(-1.6)
A 		38
(3)
A 		34.3
(2.3)
A 		10.4
(-2.2)
A 		6.3
(-3)
A 		34.8
(2.4)
A 		32
avr 21
(0.3) 		18.2
(-0.5) 		23.9
(1.2) 		13.9
(-1.8) 		9.8
(-3) 		29.9
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-3)
A 		2.3
(-1.8)
A 		1.9
(-2.2)
A 		7.5
(3)
A 		7
B 2.2
(-3)
A 		8.3
(1)
A 		6
(-0.5)
A 		11.3
(3)
A 		9
C 3.3
(-3)
A 		7.2
(-0.2)
A 		9.2
(1.3)
A 		11.6
(3)
A 		8
avr 2.2
(-3) 		5.9
(-0.2) 		5.7
(-0.3) 		10.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5
(-1.4)
A 		4.7
(-2)
A 		4.2
(-3)
A 		7.2
(3)
A 		6
(0.6)
A 		5.5
(-0.4)
A 		3
B 7.8
(0.7)
A 		1
(-2.9)
A 		4.3
(-1.1)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		12.1
(3)
A 		11
C 5.1
(-1.1)
A 		11.6
(3)
A 		8.7
(1.2)
A 		2.1
(-2.9)
A 		2
(-3)
A 		11.6
(3)
A 		10
avr 6
(-0.4) 		5.8
(-0.5) 		5.7
(-0.6) 		3.4
(-2.7) 		3.1
(-3) 		9.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9984
Sequence Type Exemplar sequence
Representative Public ID F58D2.1 NCBI
Target Description F58D2.1 /REP_DB=WormBase Gene ID /WP=CE18782 /TR=Q9XVM3 /GB=CAB03146.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070134 NCBI Caenorhabditis elegans F58D2.1 (F58D2.1) mRNA, complete cds. 11/11 None
SNAP00000001900 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13185107:13186952:1 11/11 None
GENEFINDER00000001904 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13183042:13186944:1 11/11 None
F58D2.1 ENSEMBL cdna:known chromosome:CEL140:IV:13183042:13186952:1 gene:F58D2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001899 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001906 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13183047-13186958(+) 100.0 100.0
Public Domain and Genome References
Gene Title C.elegans ZYG-11 protein like
Ensembl F58D2.1
Entrez Gene 186498 Entrez gene
SwissProt Q9XVM3 EMBL-EBI
WormBase CE18782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03146 Hypothetical protein F58D2.1 [Caenorhabditis elegans] ref|NP_502535.1| F58D2.1 [Caenorhabditis elegans] 0.0
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 1.0E-145
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 1.0E-87
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 6.0E-47
Sequence
Target Sequence 
>C. ELEGANS:191790_AT
agtttcgttcaaccaactcgattggtacctccacacgatttaacggatgctaaatcttct
tactggaatgccatcgaaacacttgtcaatttgagaatcggacgaatagattttgataaa
atatgcagaacagcaatgcaatttctgctagaacctaatttaacagagaacccctgtacc
agagccgtagtggttatgtcacagtgtgtacatcgaatgcattctgatgaattgaaatct
ttatttgaaaaaacaagacatgtgaaacgattaattcagctgatcaaatggagtgcgccg
cggaaaaatgaattaatggtttcagcttccatagaaataattattaaaattattgaaaaa
agttcaaaagcttgtatggaaataacagaagctggaataataagttttgtatcaagttgc
gttgaaaattttgagtcaaatgctattaatgataagtgcttggaattgctaagaaatctg
tcatccatgctggattgtaactcattgcaagaagtctacacttcatcgaatgtcgaaaat
attcggctcttgaccgctcgattgaatggtggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCGTTCAACCAACTCGATTGG 517 61 1030 Antisense
TCGATTGGTACCTCCACACGATTTA 412 601 1047 Antisense
ACGGATGCTAAATCTTCTTACTGGA 34 97 1072 Antisense
GGAATGCCATCGAAACACTTGTCAA 595 531 1094 Antisense
TAACAGAGAACCCCTGTACCAGAGC 274 639 1190 Antisense
GAGCCGTAGTGGTTATGTCACAGTG 614 385 1211 Antisense
GCTGATCAAATGGAGTGCGCCGCGG 77 297 1308 Antisense
AAGAAATCTGTCATCCATGCTGGAT 253 153 1500 Antisense
AGTCTACACTTCATCGAATGTCGAA 643 61 1542 Antisense
AAAATATTCGGCTCTTGACCGCTCG 130 135 1565 Antisense
TGACCGCTCGATTGAATGGTGGCAA 100 571 1580 Antisense
Sequence Source Affymetrix Proprietary Database