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[191788_at] sodium/phosphate transporter

Description T27D12.1 /REP_DB=WormBase Gene ID /WP=CE06516 /TR=Q22832 /GB=CAA93878.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 67      6grp_total > 29      4grp_total > 41      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 983
1 2 3 4 range
A 2015.8
(-3)
P 		2649.6
(3)
P 		2510.1
(1.7)
P 		2243.5
(-0.8)
P 		634
B 2099.5
(-3)
P 		2198.2
(-1.7)
P 		2553.2
(3)
P 		2104.8
(-2.9)
P 		454
C 1666.2
(-3)
P 		2418.2
(3)
P 		2379.2
(2.7)
P 		1950.3
(-0.7)
P 		752
avr 1927.2
(-3) 		2422
(2.4) 		2480.8
(3) 		2099.5
(-1.1) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 978
1 2 3 4 5 6 range
A 2290.2
(3)
P 		1908.4
(0.7)
P 		1312.3
(-3)
P 		1729.2
(-0.4)
P 		2236
(2.7)
P 		1596
(-1.3)
P 		978
B 2261.8
(3)
P 		2071.8
(1.4)
P 		1624.4
(-2.5)
P 		2048.2
(1.2)
P 		1989.1
(0.6)
P 		1566.2
(-3)
P 		696
C 2058.8
(1.8)
P 		1931.2
(0.8)
P 		1504.3
(-2.6)
P 		1605.9
(-1.8)
P 		2217.1
(3)
P 		1453.3
(-3)
P 		764
avr 2203.6
(3) 		1970.5
(1.1) 		1480.3
(-3) 		1794.4
(-0.4) 		2147.4
(2.5) 		1538.5
(-2.5) 		723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 733.9
(3)
P 		575.1
(0.7)
P 		656.2
(1.9)
P 		328.4
(-3)
P 		406
B 669.5
(3)
P 		542.9
(-0.4)
P 		591.6
(0.9)
P 		448.5
(-3)
P 		221
C 551.6
(-0.3)
P 		695.2
(1.4)
P 		829.2
(3)
P 		328.9
(-3)
P 		500
avr 651.7
(2.2) 		604.4
(1.4) 		692.3
(3) 		368.6
(-3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 522
1 2 3 4 5 6 range
A 422.2
(-0.9)
P 		678.7
(3)
P 		285.8
(-3)
P 		438.6
(-0.7)
P 		674.7
(2.9)
P 		388.6
(-1.4)
P 		393
B 787
(2.7)
P 		689.6
(1.3)
P 		394.4
(-3)
P 		542.5
(-0.9)
P 		808.1
(3)
P 		584
(-0.3)
P 		414
C 763.1
(3)
P 		589.3
(0.6)
P 		382.9
(-2.2)
P 		322.9
(-3)
P 		717.4
(2.4)
P 		486.5
(-0.8)
P 		440
avr 657.4
(1.8) 		652.5
(1.7) 		354.4
(-3) 		434.7
(-1.7) 		733.4
(3) 		486.4
(-0.9) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3907
Sequence Type Exemplar sequence
Representative Public ID T27D12.1 NCBI
Target Description T27D12.1 /REP_DB=WormBase Gene ID /WP=CE06516 /TR=Q22832 /GB=CAA93878.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064128 NCBI Caenorhabditis elegans T27D12.1 (T27D12.1) mRNA, complete cds. 11/11 None
SNAP00000038204 ENSEMBL cdna:SNAP chromosome:CEL140:II:11843164:11845680:1 11/11 None
GENEFINDER00000038214 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11843164:11845680:1 11/11 None
T27D12.1.2 ENSEMBL cdna:known chromosome:CEL140:II:11842522:11845940:1 gene:T27D12.1 11/11 None
T27D12.1.3 ENSEMBL cdna:known chromosome:CEL140:II:11843155:11845940:1 gene:T27D12.1 11/11 None
T27D12.1.1 ENSEMBL cdna:known chromosome:CEL140:II:11843160:11845940:1 gene:T27D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11843160-11845677(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl T27D12.1
Entrez Gene 174820 Entrez gene
SwissProt Q22832 EMBL-EBI
WormBase CE06516 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93878 Hypothetical protein T27D12.1 [Caenorhabditis elegans] ref|NP_496529.1| T27D12.1 [Caenorhabditis elegans] 0.0
blast CAE59694 Hypothetical protein CBG03118 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496529.1 11 26-48,79-101,108-130,140-162,167-189,199-218,264-286,333-355,362-384,394-416,428-450
T27D12.1.2 11 26-48,79-101,108-130,140-162,167-189,199-218,264-286,333-355,362-384,394-416,428-450
T27D12.1.3 11 26-48,79-101,108-130,140-162,167-189,199-218,264-286,333-355,362-384,394-416,428-450
T27D12.1.1 11 26-48,79-101,108-130,140-162,167-189,199-218,264-286,333-355,362-384,394-416,428-450
SNAP00000038204 10 26-48,160-182,197-219,226-248,292-314,321-343,363-385,392-414,424-446,458-480
GENEFINDER00000038214 11 26-48,79-101,108-130,140-162,167-189,199-218,264-286,333-355,362-384,394-416,428-450
Sequence
Target Sequence 
>C. ELEGANS:191788_AT
ccaatctatctctccaaggtgcttggattcccagttcacagcaccggaatcaccgccgcc
atccctccattccttcaattctcctccaagctcatctgcggagctgcctccgatcgcttg
acctgcctctcggaaggtgtcaaattcagactgttcaacacattggcttttgtcggatcc
gctggcttcctttgcgtccttgcattcatgggagatgagcacaagcgaaataatatgatt
gtcctgggatgcgccgctgcaatgctcggagccaccacaggaggattcttcaaagcagga
ccagtgctttccaagcagtacagtcactttgtcaccggaaatatatccctcggaattacg
attactatgctcattgttccattctttgtgaatgctttgactccaaacaatacccaggaa
gaatggaaatatgttttcttaattaccggagcagtgatggttatcaccaacatcttcttt
gtcattttcgtccgaggtgacccttgcgagtggacttccgatagcttccaccgagctagc
tccgtcgctgacttcgagcaacaccacatcagaaacaccggaatctccacgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATCTATCTCTCCAAGGTGCTTG 464 277 865 Antisense
TGCTTGGATTCCCAGTTCACAGCAC 357 579 884 Antisense
TTGACCTGCCTCTCGGAAGGTGTCA 485 679 982 Antisense
AACACATTGGCTTTTGTCGGATCCG 221 123 1021 Antisense
CTTTGCGTCCTTGCATTCATGGGAG 483 223 1054 Antisense
GGAGCCACCACAGGAGGATTCTTCA 237 521 1132 Antisense
CAGTACAGTCACTTTGTCACCGGAA 222 203 1180 Antisense
ACTATGCTCATTGTTCCATTCTTTG 613 101 1228 Antisense
TGCGAGTGGACTTCCGATAGCTTCC 668 583 1369 Antisense
TGACTTCGAGCAACACCACATCAGA 54 571 1413 Antisense
GAAACACCGGAATCTCCACGATTTC 48 357 1436 Antisense
Sequence Source Affymetrix Proprietary Database