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[191786_at] galaptin domain

Description R07B1.2 /REP_DB=WormBase Gene ID /WP=CE26722 /GEN=lec-7 /TR=SW:Q09605 /GB=CAA88540.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=galaptin domain
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_high_8_8 > 05      6grp_highest_nonorm > 80      6grp_total > 47      4grp_total > 12      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 192.1
(-1.1)
P 		146.2
(-1.7)
A 		40.2
(-3)
A 		522.8
(3)
P 		483
B 222
(-0.8)
P 		135.9
(-2)
P 		68.7
(-3)
A 		485.6
(3)
P 		417
C 146.2
(-1.9)
P 		60.6
(-3)
A 		98.2
(-2.5)
P 		521.7
(3)
P 		461
avr 186.8
(-1.4) 		114.2
(-2.4) 		69
(-3) 		510
(3) 		441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 290.3
(3)
P 		206.4
(0.5)
P 		269.9
(2.4)
P 		166.4
(-0.7)
P 		86.8
(-3)
P 		220.6
(0.9)
P 		204
B 314.8
(3)
P 		232.3
(0.5)
P 		185.8
(-0.9)
P 		135.9
(-2.4)
P 		116.4
(-3)
P 		267.4
(1.6)
P 		198
C 347.4
(2.3)
P 		210.3
(-0.3)
P 		162.5
(-1.2)
P 		64.1
(-3)
P 		67
(-2.9)
P 		383.6
(3)
P 		320
avr 317.5
(3) 		216.3
(0.3) 		206.1
(0.1) 		122.1
(-2.2) 		90.1
(-3) 		290.5
(2.3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 69.9
(2.4)
P 		31.7
(-1.1)
A 		10.5
(-3)
A 		76.5
(3)
P 		66
B 70.8
(0.8)
P 		33.6
(-1.8)
P 		15.9
(-3)
A 		103.5
(3)
P 		88
C 48.4
(-0.4)
P 		17.4
(-3)
A 		34.2
(-1.6)
P 		88
(3)
P 		71
avr 63
(0.7) 		27.6
(-2.4) 		20.2
(-3) 		89.3
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 53.5
(0.5)
P 		73.4
(3)
P 		58.8
(1.1)
P 		42.2
(-1)
P 		26.2
(-3)
P 		53.7
(0.5)
P 		47
B 109.6
(3)
P 		77.3
(0.4)
P 		45.1
(-2.3)
P 		36
(-3)
P 		47.3
(-2.1)
P 		99.7
(2.2)
P 		74
C 128.8
(3)
P 		64.2
(-0.3)
P 		41.4
(-1.5)
P 		12.9
(-3)
P 		21.7
(-2.5)
P 		128.4
(3)
P 		116
avr 97.3
(3) 		71.6
(0.7) 		48.4
(-1.4) 		30.4
(-3) 		31.7
(-2.9) 		93.9
(2.7) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16531
Sequence Type Exemplar sequence
Representative Public ID R07B1.2 NCBI
Target Description R07B1.2 /REP_DB=WormBase Gene ID /WP=CE26722 /GEN=lec-7 /TR=SW:Q09605 /GB=CAA88540.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=galaptin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077249 NCBI Caenorhabditis elegans gaLECtin family member (lec-7) (lec-7) mRNA, complete cds. 11/11 None
SNAP00000020686 ENSEMBL cdna:SNAP chromosome:CEL140:X:9852164:9852840:1 11/11 None
GENEFINDER00000020711 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9852164:9852840:1 11/11 None
R07B1.2.2 ENSEMBL cdna:known chromosome:CEL140:X:9852070:9852840:1 gene:R07B1.2 11/11 A 
R07B1.2.1 ENSEMBL cdna:known chromosome:CEL140:X:9852070:9852840:1 gene:R07B1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9852069-9852840(+) 100.0 100.0
Public Domain and Genome References
Gene Title galaptin domain
Gene Symbol lec-7
Ensembl R07B1.2
Entrez Gene 181199 Entrez gene
SwissProt Q09605 EMBL-EBI
WormBase CE26722 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88540 Hypothetical protein R07B1.2 [Caenorhabditis elegans] ref|NP_509650.3| gaLECtin family member (lec-7) [Caenorhabditis elegans] sp|Q09605|LEC7_CAEEL Probable galaptin lec-7 1.0E-101
blast T23993 hypothetical protein R07B1.2 - Caenorhabditis elegans 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.6E-59
Sequence
Target Sequence 
>C. ELEGANS:191786_AT
aaacgtcatgatcctttccatgtcagaatttatgttcacgagggatactataatataact
gtgaacagtgatctattggttgagtttgatcatcggttcccggtcgtagcagtgcaagga
attggaatcaaaggatcagtcgatattgaatcaattgtgttcaaaggatatgagttcaaa
acagagtggaaaaagcgtcatgcaattgtaaatgaggccgtgtgtgaagcatatgatacc
gtgacaaacgctccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTCATGATCCTTTCCATGTCA 380 127 271 Antisense
GATCCTTTCCATGTCAGAATTTATG 221 415 280 Antisense
ATTTATGTTCACGAGGGATACTATA 16 15 298 Antisense
AACTGTGAACAGTGATCTATTGGTT 236 143 327 Antisense
ACAGTGATCTATTGGTTGAGTTTGA 496 105 335 Antisense
TTCCCGGTCGTAGCAGTGCAAGGAA 6 697 367 Antisense
GGATCAGTCGATATTGAATCAATTG 556 509 403 Antisense
GTGGAAAAAGCGTCATGCAATTGTA 110 491 456 Antisense
GCAATTGTAAATGAGGCCGTGTGTG 524 321 472 Antisense
GGCCGTGTGTGAAGCATATGATACC 273 543 486 Antisense
TGATACCGTGACAAACGCTCCATCA 246 565 504 Antisense
Sequence Source Affymetrix Proprietary Database