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[191785_at] protein-tyrosine phosphatase

Description T20B6.1 /REP_DB=WormBase Gene ID /WP=CE13774 /TR=O02048 /GB=AAB52889.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 55      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 5.1
(-3)
A 		44.4
(3)
A 		28.6
(0.6)
A 		9.3
(-2.4)
A 		39
B 50.4
(3)
A 		7.4
(-2.8)
A 		13.1
(-2.1)
A 		6.2
(-3)
A 		44
C 17
(3)
A 		5.5
(-2.1)
A 		3.4
(-3)
A 		6.6
(-1.6)
A 		14
avr 24.2
(3) 		19.1
(1.2) 		15
(-0.3) 		7.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.1
(-2.5)
A 		2.4
(-3)
A 		36.8
(2.8)
A 		8.2
(-2)
A 		15.5
(-0.8)
A 		38
(3)
A 		36
B 5.9
(-2.3)
A 		35.1
(3)
A 		6.9
(-2.1)
A 		13.1
(-1)
A 		2.2
(-3)
A 		4.5
(-2.6)
A 		33
C 4.5
(-2.9)
A 		4
(-3)
A 		23.2
(0.9)
A 		5.6
(-2.7)
A 		13.5
(-1)
A 		33.2
(3)
A 		29
avr 5.2
(-3) 		13.8
(-0.4) 		22.3
(2.1) 		9
(-1.9) 		10.4
(-1.4) 		25.2
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-2.7)
A 		9.6
(3)
A 		7.5
(1.5)
A 		1.4
(-3)
A 		8
B 16.1
(3)
A 		1.8
(-2.8)
A 		3
(-2.3)
A 		1.3
(-3)
A 		15
C 5.6
(3)
A 		1.6
(-2.3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		5
avr 7.8
(3) 		4.3
(-0.2) 		3.9
(-0.6) 		1.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		0.8
(-3)
A 		8
(2.1)
A 		2.1
(-2.1)
A 		4.7
(-0.2)
A 		9.3
(3)
A 		9
B 2
(-2.4)
A 		11.7
(3)
A 		1.7
(-2.6)
A 		3.5
(-1.6)
A 		0.9
(-3)
A 		1.7
(-2.6)
A 		11
C 1.7
(-2.6)
A 		1.2
(-2.9)
A 		5.9
(-0.1)
A 		1.1
(-3)
A 		4.4
(-1)
A 		11.1
(3)
A 		10
avr 1.5
(-3) 		4.6
(0.2) 		5.2
(0.8) 		2.2
(-2.3) 		3.3
(-1.2) 		7.4
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6555
Sequence Type Exemplar sequence
Representative Public ID T20B6.1 NCBI
Target Description T20B6.1 /REP_DB=WormBase Gene ID /WP=CE13774 /TR=O02048 /GB=AAB52889.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065235 NCBI Caenorhabditis elegans T20B6.1 (T20B6.1) mRNA, complete cds. 11/11 None
SNAP00000028918 ENSEMBL cdna:SNAP chromosome:CEL140:III:2897028:2898361:1 10/11 None
GENEFINDER00000028921 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2897597:2898361:1 10/11 None
T20B6.1 ENSEMBL cdna:known chromosome:CEL140:III:2897701:2898361:1 gene:T20B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2897700-2898361(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl T20B6.1
Entrez Gene 188628 Entrez gene
SwissProt O02048 EMBL-EBI
WormBase CE13774 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52889 Hypothetical protein T20B6.1 [Caenorhabditis elegans] ref|NP_497636.1| T20B6.1 [Caenorhabditis elegans] 1.0E-105
blast AAB52889 Hypothetical protein T20B6.1 [Caenorhabditis elegans] ref|NP_497636.1| T20B6.1 [Caenorhabditis elegans] 7.0E-97
blast AAB52889 Hypothetical protein T20B6.1 [Caenorhabditis elegans] ref|NP_497636.1| T20B6.1 [Caenorhabditis elegans] 8.0E-97
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 5.0E-91
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 3.0E-78
blast AAF39870 Hypothetical protein H06I04.5 [Caenorhabditis elegans] ref|NP_497652.2| H06I04.5 [Caenorhabditis elegans] 1.0E-77
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 2.0E-60
blast CAB04464 Hypothetical protein F54F12.1 [Caenorhabditis elegans] ref|NP_499709.1| F54F12.1 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.7E-44
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.5E-43
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.9E-43
Sequence
Target Sequence 
>C. ELEGANS:191785_AT
acgatcaagttttccagggaccaatggacggaacagaggataaaaaggacggaaatccaa
aaaaatcgacttgtgagaagcattgggcggttattgaccagcacaacgtggcgatttgtg
ttcaattgtgtagttttgtggagggagaagagaagaagtgtgccgaatactattctgaca
aagttggaggagtcttgaaatttgggcgatattcgttgaagacaattgatgtgaagactg
atttgaaagagttcactgataagaagggtttcacgttgtacactgtggaaatcaccaatt
cgaagaagaaagacgcaccgaagaaaaccgtggacattctctacttttctggatggccgg
atcacggagccccacaagaagcatacccggctctggaaatgctcaagttctgtgagagct
acaagaagaatgtgcttgtgcactgctctgctggcgtcgggagaaccggaactctggttg
ctatcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATCAAGTTTTCCAGGGACCAAT 112 91 41 Antisense
GCATTGGGCGGTTATTGACCAGCAC 129 307 120 Antisense
GGAGGAGTCTTGAAATTTGGGCGAT 502 515 226 Antisense
GAAAACCGTGGACATTCTCTACTTT 232 351 363 Antisense
GACATTCTCTACTTTTCTGGATGGC 132 371 373 Antisense
TTCTGGATGGCCGGATCACGGAGCC 348 691 387 Antisense
ATCACGGAGCCCCACAAGAAGCATA 35 29 401 Antisense
CCCGGCTCTGGAAATGCTCAAGTTC 611 257 426 Antisense
AGAATGTGCTTGTGCACTGCTCTGC 355 75 467 Antisense
CTCTGCTGGCGTCGGGAGAACCGGA 272 231 486 Antisense
ACCGGAACTCTGGTTGCTATCAAGT 600 87 505 Antisense
Sequence Source Affymetrix Proprietary Database