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[191784_s_at]

Description Y48E1B.9 /REP_DB=WormBase Gene ID /WP=CE14868 /TR=O18202 /GB=CAB07697.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=C-type lectin binding domain
Cluster 6grp_high1_10_10 > 98      6grp_total > 96      4grp_total > 04      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 108.6
(-2.2)
P 		73.7
(-2.8)
M 		64.8
(-3)
A 		397.6
(3)
P 		333
B 135.2
(-1.6)
P 		41.5
(-3)
A 		38.4
(-3)
A 		456.7
(3)
P 		418
C 118.3
(-2.2)
P 		71.1
(-3)
A 		68.4
(-3)
P 		440.5
(3)
P 		372
avr 120.7
(-2) 		62.1
(-2.9) 		57.2
(-3) 		431.6
(3) 		374

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 123.9
(-1.7)
A 		50.1
(-3)
P 		97.9
(-2.1)
P 		180.9
(-0.6)
P 		249.9
(0.6)
P 		379.8
(3)
P 		330
B 94.8
(-2.6)
P 		73.3
(-3)
P 		105.8
(-2.3)
P 		181.9
(-0.8)
P 		279.2
(1.2)
P 		370.6
(3)
P 		297
C 92
(-2.8)
A 		85
(-3)
A 		99
(-2.7)
P 		185.9
(-0.5)
P 		242.3
(0.9)
P 		328.7
(3)
P 		244
avr 103.6
(-2.3) 		69.5
(-3) 		100.9
(-2.4) 		182.9
(-0.7) 		257.1
(0.9) 		359.7
(3) 		290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 39.5
(0.3)
P 		16
(-3)
M 		16.9
(-2.9)
A 		58.2
(3)
P 		42
B 43.1
(-0.7)
P 		10.3
(-2.9)
A 		8.9
(-3)
A 		97.3
(3)
P 		88
C 39.2
(-0.9)
P 		20.5
(-3)
A 		23.8
(-2.6)
P 		74.3
(3)
P 		54
avr 40.6
(-0.5) 		15.6
(-3) 		16.5
(-2.9) 		76.6
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 22.8
(-2.6)
A 		17.8
(-3)
P 		21.3
(-2.7)
P 		45.9
(-0.7)
P 		75.4
(1.6)
P 		92.5
(3)
P 		75
B 33
(-2.5)
P 		24.4
(-3)
P 		25.7
(-2.9)
P 		48.2
(-1.7)
P 		113.4
(1.7)
P 		138.2
(3)
P 		114
C 34.1
(-2.4)
A 		25.9
(-3)
A 		25.2
(-3)
P 		37.4
(-2.1)
P 		78.4
(0.8)
P 		110
(3)
P 		85
avr 30
(-2.5) 		22.7
(-3) 		24.1
(-2.9) 		43.8
(-1.6) 		89.1
(1.4) 		113.6
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191784_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3635
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.9 NCBI
Target Description Y48E1B.9 /REP_DB=WormBase Gene ID /WP=CE14868 /TR=O18202 /GB=CAB07697.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=C-type lectin binding domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027285 NCBI Caenorhabditis elegans Y48E1B.16 (Y48E1B.16) mRNA, complete cds. 11/11 None
SNAP00000010061 ENSEMBL cdna:SNAP chromosome:CEL140:II:13585750:13593032:-1 11/11 None
GENEFINDER00000010070 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13588935:13596439:-1 11/11 None
Y48E1B.16 ENSEMBL cdna:known chromosome:CEL140:II:13588932:13590428:-1 gene:Y48E1B.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13588931-13595526(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48E1B.16
Entrez Gene 175003 Entrez gene
SwissProt Q7JK99 EMBL-EBI
WormBase CE36238 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE54926 Hypothetical protein Y48E1B.16 [Caenorhabditis elegans] ref|NP_001022456.1| Y48E1B.16 [Caenorhabditis elegans] 1.0E-174
blast CAE54926 Hypothetical protein Y48E1B.16 [Caenorhabditis elegans] ref|NP_001022456.1| Y48E1B.16 [Caenorhabditis elegans] 1.0E-160
blast CAE54926 Hypothetical protein Y48E1B.16 [Caenorhabditis elegans] ref|NP_001022456.1| Y48E1B.16 [Caenorhabditis elegans] 1.0E-158
blast CAB07697 Hypothetical protein Y48E1B.9 [Caenorhabditis elegans] ref|NP_496854.2| Y48E1B.9 [Caenorhabditis elegans] 2.0E-86
blast CAE54925 Hypothetical protein Y48E1B.15 [Caenorhabditis elegans] ref|NP_001022455.1| Y48E1B.15 [Caenorhabditis elegans] 6.0E-83
blast CAE73326 Hypothetical protein CBG20755 [Caenorhabditis briggsae] 3.0E-74
blast CAE73326 Hypothetical protein CBG20755 [Caenorhabditis briggsae] 2.0E-71
blast CAB07697 Hypothetical protein Y48E1B.9 [Caenorhabditis elegans] ref|NP_496854.2| Y48E1B.9 [Caenorhabditis elegans] 3.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.7E-7
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-4
Pfam IPR001304 EMBL-EBI C-type lectin 1.3E-15
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-4
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:191784_S_AT
aactcaaaacccggcacttgttcattcttcaggacagattgttgggcaggttgcttctgg
aagccacggcctggaccgcaaagttgagtacctgaaaagtcgcctagacatcatgcagtc
cgagattcaaggcacctggaataccagtgagtcaggcaccaagtacaaaatcttcgagga
gaggatgaactggaatgatgcgcagctccactgcgaagagctcggcagtcacctggccta
cttggatagtgaatctaaaaacacctatgccacgtctctaatcgattctcaaaacattag
catggtctggttcggcctgcggactgaagtaggcttgggctcaggctcagacacctactc
aaatttctcgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCAAAACCCGGCACTTGTTCAT 30 141 1590 Antisense
GTTGGGCAGGTTGCTTCTGGAAGCC 238 437 1630 Antisense
CCACGGCCTGGACCGCAAAGTTGAG 420 269 1653 Antisense
GTCGCCTAGACATCATGCAGTCCGA 469 475 1688 Antisense
GCAGTCCGAGATTCAAGGCACCTGG 449 311 1704 Antisense
GCAGCTCCACTGCGAAGAGCTCGGC 689 311 1791 Antisense
AGTCACCTGGCCTACTTGGATAGTG 581 59 1816 Antisense
TATGCCACGTCTCTAATCGATTCTC 365 657 1855 Antisense
ACATTAGCATGGTCTGGTTCGGCCT 341 105 1883 Antisense
TGAAGTAGGCTTGGGCTCAGGCTCA 586 573 1914 Antisense
GACACCTACTCAAATTTCTCGAACC 321 367 1939 Antisense
Sequence Source Affymetrix Proprietary Database