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[191783_at] 2,4-dienoyl-CoA reductase

Description F53C11.3 /REP_DB=WormBase Gene ID /WP=CE10908 /TR=SW:Q93761 /GB=CAB02118.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 37      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 0      6grp_total > 08      4grp_total > 01      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4931
1 2 3 4 range
A 1477.7
(-3)
P 		1557.4
(-2.9)
P 		2097.6
(-2.2)
P 		6408.9
(3)
P 		4931
B 1584.2
(-2.9)
P 		1514.7
(-3)
P 		2444.9
(-1.8)
P 		6150.2
(3)
P 		4636
C 1744.9
(-2.7)
P 		1521.7
(-3)
P 		2103.4
(-2.2)
P 		5913.5
(3)
P 		4392
avr 1602.3
(-2.9) 		1531.3
(-3) 		2215.3
(-2.1) 		6157.5
(3) 		4626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1596
1 2 3 4 5 6 range
A 2674.3
(3)
P 		1535.5
(-1.9)
P 		2085.4
(0.4)
P 		1662.8
(-1.4)
P 		1288.8
(-3)
P 		1619.1
(-1.6)
P 		1386
B 2232
(3)
P 		1542.7
(-1)
P 		1622.9
(-0.5)
P 		1699.6
(-0.1)
P 		1196.7
(-3)
P 		1673.1
(-0.2)
P 		1035
C 2262.3
(3)
P 		1525.7
(-0.7)
P 		1817.9
(0.7)
P 		1665.5
(-0)
P 		1077.9
(-3)
P 		1570
(-0.5)
P 		1184
avr 2389.5
(3) 		1534.6
(-1.3) 		1842.1
(0.3) 		1676
(-0.6) 		1187.8
(-3) 		1620.7
(-0.8) 		1202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 538
(-1)
P 		338.1
(-3)
P 		548.3
(-0.9)
P 		938.1
(3)
P 		600
B 505.2
(-2.2)
P 		374.1
(-3)
P 		566.5
(-1.8)
P 		1310.6
(3)
P 		937
C 577.6
(-1.5)
P 		437.5
(-3)
P 		733.1
(0.2)
P 		997.1
(3)
P 		560
avr 540.3
(-1.7) 		383.2
(-3) 		616
(-1) 		1081.9
(3) 		699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 493
(1)
P 		546.1
(3)
P 		454.2
(-0.5)
P 		421.7
(-1.7)
P 		388.9
(-3)
P 		394.2
(-2.8)
P 		157
B 776.6
(3)
P 		513.5
(-1.1)
P 		394.1
(-3)
P 		450.2
(-2.1)
P 		486.2
(-1.6)
P 		623.9
(0.6)
P 		383
C 838.5
(3)
P 		465.5
(-1.4)
P 		462.7
(-1.5)
P 		334.9
(-3)
P 		348.8
(-2.8)
P 		525.6
(-0.7)
P 		504
avr 702.7
(3) 		508.4
(-0.9) 		437
(-2.3) 		402.3
(-3) 		408
(-2.9) 		514.6
(-0.8) 		300
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14584
Sequence Type Exemplar sequence
Representative Public ID F53C11.3 NCBI
Target Description F53C11.3 /REP_DB=WormBase Gene ID /WP=CE10908 /TR=SW:Q93761 /GB=CAB02118.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074012 NCBI Caenorhabditis elegans F53C11.3 (F53C11.3) mRNA, complete cds. 11/11 None
SNAP00000007158 ENSEMBL cdna:SNAP chromosome:CEL140:V:13785078:13786623:1 11/11 None
GENEFINDER00000007169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13785078:13786623:1 11/11 None
F53C11.3 ENSEMBL cdna:known chromosome:CEL140:V:13784991:13786691:1 gene:F53C11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13785077-13786623(+) 100.0 100.0
Public Domain and Genome References
Gene Title 2,4-dienoyl-CoA reductase
Ensembl F53C11.3
Entrez Gene 179872 Entrez gene
SwissProt Q93761 EMBL-EBI
WormBase CE10908 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592274_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CANINE:1584003_X_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CANINE:1584002_S_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CANINE:1584001_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CANINE_2:CFA.6367.1.A1_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CANINE_2:CFAAFFX.14220.1.S1_S_AT similar to 2,4-dienoyl-CoA reductase, mitochondrial precursor (2,4-dienoyl-CoA reductase [NADPH]) (4-enoyl-CoA reductase [NADPH]) cfa
CHICKEN:GGA.9634.1.S1_AT 2,4-dienoyl CoA reductase 1, mitochondrial gga
HG-U133A:202447_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133_PLUS_2:202447_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133A_2:202447_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-FOCUS:202447_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HUGENEFL:U49352_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
U133_X3P:G4503300_3P_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U95AV2:38104_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133_PLUS_2:236432_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133B:236432_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133_PLUS_2:240510_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U133B:240510_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U95C:64647_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U95E:81332_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U95E:86819_R_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HG-U95E:89658_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HU35KSUBC:RC_H95037_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
HU35KSUBC:RC_N76059_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
U133_X3P:HS.118959.0.A1_3P_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
U133_X3P:HS.38540.0.A1_3P_AT 2,4-dienoyl CoA reductase 1, mitochondrial hs
MU11KSUBA:AA521793_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MG-U74BV2:115824_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MG-U74AV2:160711_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOE430A:1449443_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOUSE430A_2:1449443_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOUSE430_2:1449443_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOE430A:1419367_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOUSE430A_2:1419367_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MOUSE430_2:1419367_AT 2,4-dienoyl CoA reductase 1, mitochondrial mm
MU19KSUBB:TC33801_AT 2,4-dienoyl CoA reductase 1, mitochondrial (Decr1), mRNA mm
RT-U34:D00569_G_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RG-U34A:D00569_G_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RT-U34:D00569_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RG-U34A:D00569_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RAE230A:1367777_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RAT230_2:1367777_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RAE230B:1394586_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
RAT230_2:1394586_AT 2,4-dienoyl CoA reductase 1, mitochondrial rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02118 Hypothetical protein F53C11.3 [Caenorhabditis elegans] ref|NP_506413.1| F53C11.3 [Caenorhabditis elegans] sp|Q93761|YXEK_CAEEL Hypothetical oxidoreductase F53C11.3 1.0E-168
blast CAE66240 Hypothetical protein CBG11484 [Caenorhabditis briggsae] 1.0E-160
blast CAA91310 Hypothetical protein T05C12.3 [Caenorhabditis elegans] ref|NP_495714.1| DYnein Light chain (Tctex type] family member (dylt-3) [Caenorhabditis elegans] sp|Q22230|YVX3_CAEEL Hypothetical oxidoreductase T05C12.3 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:191783_AT
ttcatcatggcaaccgaacgtctctcaccgaatgcctacggtaccatcattgatatcgtt
ctgaaaggaactctccacgtcaccaccgagctcggccgtcgctgtattcaacaaaagcgt
ggagccagtgtgctcagcatcacaacactttatgcacaatctggtgcaccatttgtggtt
ccatcagcggtttcgaaggctggtgtcgaaaatatgacaaaatcattggcgtctgaatgg
gcgaaacacggattgcgattcaatgcgattgctcctggaccaattccaacagagggagca
ttcggaagattatttgccggggagttgaaggattctggagatgctatgaaagcatcagta
ccagttggaagacttgggcatccggaagaaattgccaatttggcagcgttcatgtcgtct
gatttcatgtcctggatgaatggagcgattatcgatttcgacggtggccaacagcacatt
catcatggatcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATCATGGCAACCGAACGTCTCT 159 689 361 Antisense
GTCTCTCACCGAATGCCTACGGTAC 517 467 380 Antisense
TCTGAAAGGAACTCTCCACGTCACC 515 605 420 Antisense
GTGGAGCCAGTGTGCTCAGCATCAC 59 491 479 Antisense
TGGTGCACCATTTGTGGTTCCATCA 421 553 522 Antisense
GGTTCCATCAGCGGTTTCGAAGGCT 363 507 537 Antisense
GATTCAATGCGATTGCTCCTGGACC 389 431 617 Antisense
CAATTTGGCAGCGTTCATGTCGTCT 476 179 756 Antisense
ATGTCGTCTGATTTCATGTCCTGGA 338 49 772 Antisense
TCGATTTCGACGGTGGCCAACAGCA 637 601 812 Antisense
ACAGCACATTCATCATGGATCCCAT 380 107 831 Antisense
Sequence Source Affymetrix Proprietary Database