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[191781_s_at] Tripeptidyl-peptidase II

Description F21H12.6 /REP_DB=WormBase Gene ID /WP=CE01917 /TR=SW:Q09541 /GB=AAC46718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Tripeptidyl-peptidase II
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 66      6grp_total > 63      4grp_total > 63      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 1440.3
(3)
P 		1126.8
(-3)
P 		1161.4
(-2.3)
P 		1337.4
(1)
P 		314
B 1438.4
(2.8)
P 		1135.9
(-2.6)
P 		1451.3
(3)
P 		1116
(-3)
P 		335
C 1311.5
(3)
P 		984.2
(-2.9)
P 		1181.6
(0.7)
P 		976.7
(-3)
P 		335
avr 1396.7
(3) 		1082.3
(-3) 		1264.8
(0.5) 		1143.4
(-1.8) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 878
1 2 3 4 5 6 range
A 1395.2
(-3)
P 		1431.8
(-2.3)
P 		1705.6
(3)
P 		1567.1
(0.3)
P 		1576.5
(0.5)
P 		1469.7
(-1.6)
P 		310
B 1361.1
(-3)
P 		1488.1
(-1.3)
P 		1817.7
(3)
P 		1709.4
(1.6)
P 		1479.2
(-1.4)
P 		1703.6
(1.5)
P 		457
C 1066.1
(-3)
P 		1518.6
(0.1)
P 		1583.8
(0.5)
P 		1944.2
(3)
P 		1282.5
(-1.5)
P 		1315.4
(-1.3)
P 		878
avr 1274.1
(-3) 		1479.5
(-0.4) 		1702.4
(2.5) 		1740.2
(3) 		1446.1
(-0.8) 		1496.2
(-0.1) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 524.4
(3)
P 		244.6
(-2.1)
P 		303.6
(-1)
P 		195.8
(-3)
P 		329
B 458.7
(3)
P 		280.5
(-1.8)
P 		336.3
(-0.3)
P 		237.8
(-3)
P 		221
C 434.2
(3)
P 		283
(-0.4)
P 		411.8
(2.5)
P 		164.7
(-3)
P 		270
avr 472.4
(3) 		269.4
(-1.5) 		350.6
(0.3) 		199.4
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 257.2
(-3)
P 		509.2
(3)
P 		371.4
(-0.3)
P 		397.5
(0.3)
P 		475.7
(2.2)
P 		357.8
(-0.6)
P 		252
B 473.6
(-2)
P 		495.3
(-1.3)
P 		441.4
(-3)
P 		452.8
(-2.6)
P 		601
(1.9)
P 		635.3
(3)
P 		194
C 395.2
(-2.7)
P 		463.4
(3)
P 		403.1
(-2)
P 		391
(-3)
P 		415
(-1)
P 		440.3
(1.1)
P 		72
avr 375.3
(-3) 		489.3
(2.6) 		405.3
(-1.5) 		413.8
(-1.1) 		497.2
(3) 		477.8
(2) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191781_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5855
Sequence Type Exemplar sequence
Representative Public ID F21H12.6 NCBI
Target Description F21H12.6 /REP_DB=WormBase Gene ID /WP=CE01917 /TR=SW:Q09541 /GB=AAC46718.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Tripeptidyl-peptidase II
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062820 NCBI Caenorhabditis elegans F21H12.6 (F21H12.6) mRNA, complete cds. 11/11 None
SNAP00000015299 ENSEMBL cdna:SNAP chromosome:CEL140:II:6092834:6097155:-1 11/11 None
GENEFINDER00000015301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6092834:6097155:-1 11/11 None
F21H12.6 ENSEMBL cdna:known chromosome:CEL140:II:6092720:6097551:-1 gene:F21H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6092830-6097382(-) 100.0 100.0
Public Domain and Genome References
Gene Title Tripeptidyl-peptidase II
Ensembl F21H12.6
Entrez Gene 174018 Entrez gene
SwissProt Q09541 EMBL-EBI
WormBase CE01917 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16532_AT subtilase family protein at
ATH1-121501:254433_AT subtilase family protein at
DROSOPHILA_2:1625908_A_AT tripeptidyl-peptidase II dm
DROSGENOME1:154239_AT tripeptidyl-peptidase II dm
CHICKEN:GGAAFFX.10793.1.S1_S_AT similar to Tripeptidyl-peptidase II (TPP-II) (Tripeptidyl aminopeptidase) gga
HG-U133A:203375_S_AT tripeptidyl peptidase II hs
HG-U133_PLUS_2:203375_S_AT tripeptidyl peptidase II hs
HG-U133A_2:203375_S_AT tripeptidyl peptidase II hs
HG-FOCUS:203375_S_AT tripeptidyl peptidase II hs
HUGENEFL:M73047_AT tripeptidyl peptidase II hs
U133_X3P:G4507656_3P_A_AT tripeptidyl peptidase II hs
U133_X3P:HS2.399768.1.S1_3P_X_AT tripeptidyl peptidase II hs
U133_X3P:HS2.399768.1.S1_3P_AT tripeptidyl peptidase II hs
U133_X3P:HS.1117.0.S1_3P_A_AT tripeptidyl peptidase II hs
U133_X3P:1569856_3P_AT tripeptidyl peptidase II hs
HG-U133_PLUS_2:1569856_AT tripeptidyl peptidase II hs
HG-U133_PLUS_2:1569857_S_AT tripeptidyl peptidase II hs
HG-U133A_2:203374_S_AT tripeptidyl peptidase II hs
HG-U133_PLUS_2:203374_S_AT tripeptidyl peptidase II hs
HG-U133A:203374_S_AT tripeptidyl peptidase II hs
HG-U95AV2:41459_AT tripeptidyl peptidase II hs
MOUSE430A_2:1438264_A_AT tripeptidyl peptidase II mm
MOE430A:1438264_A_AT tripeptidyl peptidase II mm
MOUSE430_2:1438264_A_AT tripeptidyl peptidase II mm
MU11KSUBB:X81323_S_AT tripeptidyl peptidase II mm
MG-U74AV2:96730_AT tripeptidyl peptidase II mm
MG-U74AV2:161537_F_AT tripeptidyl peptidase II mm
MOE430A:1421894_A_AT tripeptidyl peptidase II mm
MOUSE430A_2:1421894_A_AT tripeptidyl peptidase II mm
MOUSE430_2:1421894_A_AT tripeptidyl peptidase II mm
MOE430A:1421893_A_AT tripeptidyl peptidase II mm
MOUSE430A_2:1421893_A_AT tripeptidyl peptidase II mm
MOUSE430_2:1421893_A_AT tripeptidyl peptidase II mm
MOE430A:1430576_AT tripeptidyl peptidase II mm
MOUSE430A_2:1430576_AT tripeptidyl peptidase II mm
MOUSE430_2:1430576_AT tripeptidyl peptidase II mm
MOE430A:1430575_A_AT tripeptidyl peptidase II mm
MOUSE430A_2:1430575_A_AT tripeptidyl peptidase II mm
MOUSE430_2:1430575_A_AT tripeptidyl peptidase II mm
MU19KSUBA:TC21432_S_AT Tripeptidyl peptidase II, mRNA (cDNA clone IMAGE:3493127) mm
RG-U34A:RC_AI176351_S_AT tripeptidyl peptidase II rn
RG-U34A:U50194_AT tripeptidyl peptidase II rn
RG-U34A:RC_AI071507_S_AT tripeptidyl peptidase II rn
RG-U34B:RC_AI029933_AT tripeptidyl peptidase II rn
RAE230A:1367976_AT tripeptidyl peptidase II rn
RAT230_2:1367976_AT tripeptidyl peptidase II rn
RG-U34A:RC_AI178007_AT Tripeptidyl peptidase II rn
RG-U34A:RC_AI069990_AT Tripeptidyl peptidase II rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495221 F21H12.6 [Caenorhabditis elegans] gb|AAC46718.1| Hypothetical protein F21H12.6 [Caenorhabditis elegans] sp|Q09541|YQS6_CAEEL Hypothetical subtilase-type proteinase F21H12.6 in chromosome II 0.0
blast CAE59246 Hypothetical protein CBG02572 [Caenorhabditis briggsae] 0.0
blast AAH71158 MGC83244 protein [Xenopus laevis] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000209 EMBL-EBI Peptidase S8 and S53, subtilisin, kexin, sedolisin 1.3E-82
Pfam IPR000209 EMBL-EBI Peptidase S8 and S53, subtilisin, kexin, sedolisin 1.3E-82
Sequence
Target Sequence 
>C. ELEGANS:191781_S_AT
gatgatgatctccttactgttgacaaatggctggcactaaccggaggcagtgaggaccag
cgaaaggatgtggtgaagttgatttcacaatttgaggaacggaagaaaagtattattctc
gctttgcaagctctttcatcattggagcaggatattgaagttcgtaagagcaagttcgac
gttccagcaagtcttcgtttcggaggaatcactcctctaattttcggtggaaagcaagga
gaagtgatcaataagaagtctgaaggttatgaagcactgaaatcaaaatctgaacaaatt
gatgcaactgtctctgaagaactgaaaaagttggatagtaattggactggaaatcagttt
tacgtcaagcttctcgtttggttgtctgctgatgatactaaaactgcactgatctctgcc
aaacatgcagctgctcttggacaatttggaagatgtgcaaagcttctcaacaaagctgga
gatgaactgaagtcgtctgctactgattcgcaagctgttgatacatcattggctgaagtc
tgcgaaagtctcgagtggaatcatcttgctactcacttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGATCTCCTTACTGTTGACA 133 411 3511 Antisense
AAATGGCTGGCACTAACCGGAGGCA 671 119 3535 Antisense
TTCTCGCTTTGCAAGCTCTTTCATC 481 693 3626 Antisense
AAGAGCAAGTTCGACGTTCCAGCAA 148 153 3676 Antisense
GTTCCAGCAAGTCTTCGTTTCGGAG 653 439 3691 Antisense
AAATCAGTTTTACGTCAAGCTTCTC 449 117 3861 Antisense
CAAGCTTCTCGTTTGGTTGTCTGCT 581 185 3876 Antisense
TAAAACTGCACTGATCTCTGCCAAA 192 641 3909 Antisense
CTGCCAAACATGCAGCTGCTCTTGG 138 237 3926 Antisense
GAAGTCGTCTGCTACTGATTCGCAA 131 337 3999 Antisense
TGGAATCATCTTGCTACTCACTTTA 635 545 4066 Antisense
Sequence Source Affymetrix Proprietary Database