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[191779_s_at] tyrosine-protein kinase like

Description R10H10.7 /REP_DB=WormBase Gene ID /WP=CE21118 /TR=Q19378 /GB=CAA94614.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase like
Cluster 6grp_total > 66      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 89.5
(1.8)
A 		94.8
(3)
A 		68.4
(-3)
A 		76.5
(-1.2)
A 		26
B 107.4
(2.6)
P 		68.5
(-2.7)
A 		66.1
(-3)
A 		110
(3)
A 		44
C 118.1
(1.4)
A 		109.5
(0.8)
A 		54.7
(-3)
A 		141.1
(3)
A 		86
avr 105
(2.5) 		90.9
(0.6) 		63.1
(-3) 		109.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 113.8
(-1.9)
A 		101.9
(-3)
A 		154.4
(2)
A 		117.3
(-1.5)
A 		131.9
(-0.1)
A 		164.4
(3)
A 		63
B 100.9
(-3)
A 		140.4
(-1.3)
A 		111.5
(-2.5)
A 		153
(-0.7)
A 		143
(-1.2)
P 		239.5
(3)
P 		139
C 131.6
(-2.1)
P 		145
(-1.6)
A 		174.2
(-0.4)
A 		177.2
(-0.3)
A 		109.4
(-3)
P 		258.5
(3)
P 		149
avr 115.4
(-3) 		129.1
(-2.2) 		146.7
(-1.2) 		149.2
(-1.1) 		128.1
(-2.3) 		220.8
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 32.6
(3)
A 		20.6
(-0.4)
A 		17.9
(-1.1)
A 		11.2
(-3)
A 		21
B 34.3
(3)
P 		16.9
(-2.5)
A 		15.3
(-3)
A 		23.4
(-0.4)
A 		19
C 39.1
(3)
A 		31.5
(0.7)
A 		19.1
(-3)
A 		23.8
(-1.6)
A 		20
avr 35.3
(3) 		23
(-1.1) 		17.4
(-3) 		19.5
(-2.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 21
(-3)
A 		36.2
(1.8)
A 		33.6
(1)
A 		29.8
(-0.2)
A 		39.8
(2.9)
A 		40
(3)
A 		19
B 35.1
(-2.2)
A 		46.7
(-1.1)
A 		27.1
(-3)
A 		40.5
(-1.7)
A 		58.1
(-0)
P 		89.3
(3)
P 		62
C 48.8
(-1.4)
P 		44.3
(-2)
A 		44.3
(-2)
A 		35.6
(-3)
A 		35.4
(-3)
P 		86.5
(3)
P 		51
avr 35
(-3) 		42.4
(-1.8) 		35
(-3) 		35.3
(-3) 		44.4
(-1.5) 		71.9
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8847
Sequence Type Exemplar sequence
Representative Public ID R10H10.7 NCBI
Target Description R10H10.7 /REP_DB=WormBase Gene ID /WP=CE21118 /TR=Q19378 /GB=CAA94614.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069522 NCBI Caenorhabditis elegans R10H10.7 (R10H10.7) mRNA, complete cds. 11/11 None
SNAP00000020335 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10408814:10413901:-1 10/11 None
GENEFINDER00000020340 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10410030:10413901:-1 11/11 None
R10H10.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:10409980:10413902:-1 gene:R10H10.7 11/11 None
R10H10.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:10409980:10413901:-1 gene:R10H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10410035-10417829(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine-protein kinase like
Ensembl R10H10.7
Entrez Gene 177932 Entrez gene
SwissProt Q19378 EMBL-EBI
WormBase CE29819 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94614 Hypothetical protein R10H10.7 [Caenorhabditis elegans] ref|NP_501923.2| R10H10.7 [Caenorhabditis elegans] 0.0
blast CAE63824 Hypothetical protein CBG08375 [Caenorhabditis briggsae] 0.0
blast CAE63824 Hypothetical protein CBG08375 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR002606 EMBL-EBI Riboflavin kinase / FAD synthetase 3.2E-60
Sequence
Target Sequence 
>C. ELEGANS:191779_S_AT
acctgttgaaccacccaaagaatcggaagatgagaaaagtagtccaacgcctcagcacat
tctcgtcgaaaagatccttcttcgaacaaaacatatgttaactagtgaacttttgttcat
tcaattgaaagcgttagacattttattggatggattagattttttgaaatgttatgacga
tatgcttcttcccatgattcatcagaattggcatggtgttatggaaatcacaaaagacaa
gaatccgttgacactgatagtgataattcaatgtattgaaaatatgagtgagcaatcggg
aagttttgtgcagagcaaggtgttgagagaattttggccaactgtcgaacattattttat
ggatattatgaagaataagcaatattttgaacaaactgcggaatataaattgggagtaaa
aatcatcgaagcagctcctgaaatcgtgatatatattggattcactgaacaagaagctga
agggacttttgtgaaattattagatcttgcaattcaacaaaacgggtgtttttcgtcttt
cgcgcgggtagaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGTTGAACCACCCAAAGAATCG 246 89 3642 Antisense
GAGAAAAGTAGTCCAACGCCTCAGC 265 393 3673 Antisense
CCTCAGCACATTCTCGTCGAAAAGA 405 267 3691 Antisense
AAAGATCCTTCTTCGAACAAAACAT 99 121 3711 Antisense
ATATGCTTCTTCCCATGATTCATCA 494 21 3821 Antisense
AAGAATCCGTTGACACTGATAGTGA 138 151 3880 Antisense
GAGCAATCGGGAAGTTTTGTGCAGA 363 391 3931 Antisense
TGAGAGAATTTTGGCCAACTGTCGA 646 567 3965 Antisense
GTAAAAATCATCGAAGCAGCTCCTG 590 461 4057 Antisense
AAGCAGCTCCTGAAATCGTGATATA 604 151 4070 Antisense
TTCGTCTTTCGCGCGGGTAGAAAAG 642 687 4173 Antisense
Sequence Source Affymetrix Proprietary Database