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[191778_s_at] UDP-glucuronosyltransferase

Description T19H12.9 /REP_DB=WormBase Gene ID /WP=CE13768 /TR=O01614 /GB=AAC69032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 41      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1364
1 2 3 4 range
A 211.9
(-3)
P 		1508.4
(3)
P 		1263.9
(1.9)
P 		710.8
(-0.7)
P 		1297
B 166.9
(-3)
P 		1395.4
(3)
P 		1322.2
(2.6)
P 		713.9
(-0.3)
P 		1229
C 207.7
(-3)
P 		1124.4
(1.2)
P 		1531.2
(3)
P 		666.9
(-0.9)
P 		1324
avr 195.5
(-3) 		1342.7
(2.8) 		1372.4
(3) 		697.2
(-0.4) 		1177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 331.5
(2.2)
P 		369.3
(3)
P 		272.5
(0.8)
P 		212.9
(-0.5)
P 		102
(-3)
P 		126.3
(-2.5)
P 		267
B 406.1
(2.5)
P 		434.5
(3)
P 		313.5
(0.7)
P 		206.5
(-1.3)
P 		184.5
(-1.8)
P 		119
(-3)
P 		316
C 361.3
(1.9)
P 		406
(3)
P 		200.9
(-2)
P 		186.4
(-2.3)
P 		159.4
(-3)
P 		180
(-2.5)
P 		247
avr 366.3
(2.2) 		403.3
(3) 		262.3
(-0.2) 		201.9
(-1.6) 		148.6
(-2.8) 		141.8
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 77.2
(-3)
P 		327.4
(2.9)
P 		330.4
(3)
P 		104.1
(-2.4)
P 		253
B 53.2
(-3)
P 		344.6
(3)
P 		306.4
(2.2)
P 		152.1
(-1)
P 		291
C 68.7
(-3)
P 		323.3
(0.3)
P 		533.7
(3)
P 		112.4
(-2.4)
P 		465
avr 66.4
(-3) 		331.8
(1.9) 		390.2
(3) 		122.9
(-2) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 61.1
(-1.2)
P 		131.3
(3)
P 		59.3
(-1.3)
P 		54
(-1.6)
P 		30.8
(-3)
P 		30.7
(-3)
P 		101
B 141.3
(2.8)
P 		144.6
(3)
P 		76.1
(-1.1)
P 		54.7
(-2.4)
P 		75
(-1.2)
P 		44.4
(-3)
P 		100
C 133.9
(3)
P 		123.9
(2.4)
P 		51.1
(-2.2)
P 		37.5
(-3)
P 		51.6
(-2.1)
P 		60.3
(-1.6)
P 		96
avr 112.1
(1.6) 		133.3
(3) 		62.2
(-1.8) 		48.7
(-2.8) 		52.5
(-2.5) 		45.1
(-3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191778_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14829
Sequence Type Exemplar sequence
Representative Public ID T19H12.9 NCBI
Target Description T19H12.9 /REP_DB=WormBase Gene ID /WP=CE13768 /TR=O01614 /GB=AAC69032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071908 NCBI Caenorhabditis elegans T19H12.9 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000027980 ENSEMBL cdna:SNAP chromosome:CEL140:V:4885918:4889292:-1 10/11 None
GENEFINDER00000027990 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4886647:4889292:-1 10/11 None
T19H12.9.1 ENSEMBL cdna:known chromosome:CEL140:V:4887035:4889430:-1 gene:T19H12.9 11/11 None
T19H12.9.2 ENSEMBL cdna:known chromosome:CEL140:V:4887035:4889725:-1 gene:T19H12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4887034-4889409(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-12
Ensembl T19H12.9
Entrez Gene 178880 Entrez gene
SwissProt O01614 EMBL-EBI
WormBase CE13768 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.28627.1.S1_AT similar to UDP glycosyltransferase 3 family, polypeptide A2 cfa
CANINE_2:CFAAFFX.28634.1.S1_AT similar to UDP glycosyltransferase 3 family, polypeptide A2 cfa
HG-U133_PLUS_2:235904_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U133B:235904_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
U133_X3P:HS.172709.0.A1_3P_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
U133_X3P:HS.132501.0.A1_3P_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
U133_X3P:HS.128350.0.A1_3P_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U133_PLUS_2:236597_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U133B:236597_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U133_PLUS_2:237572_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U133B:237572_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U95E:74272_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U95D:78221_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
HG-U95E:84697_AT UDP glycosyltransferase 3 family, polypeptide A1 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69032 Udp-glucuronosyltransferase protein 12 [Caenorhabditis elegans] ref|NP_504309.1| T19H12.9 [Caenorhabditis elegans] 0.0
blast CAE64222 Hypothetical protein CBG08855 [Caenorhabditis briggsae] 0.0
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.9E-24
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.9E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504309.1 2 7-29,497-519
T19H12.9.1 2 7-29,497-519
T19H12.9.2 2 7-29,497-519
Sequence
Target Sequence 
>C. ELEGANS:191778_S_AT
caaggtgttcgaatcactcccagatgtcacatttatctggaaatatgagaaagatgacct
ggaattccagaagaggctcccaaagaatgttcatttaaagaaatggattccacagccttc
tttgcttgctgacaaacgggtaaaactttttattactcatggtgggctgggaagtacaat
ggaagtagcttacactggaaaacctgcaatagttgttccaattttcggagatcaacatca
taatgccgttatgttggcaaggcatggaggagctgtggcatacgacaagtttgatttgaa
aaatggagaaaagttgacagcagttgttcatgaaatgatatcgagcaccaagtaccaaga
aaacgcggaggctctgcaacatgtgctattcaatcaaccaattgatccaaaaatgaattt
tttgaatcacttggattttgcaatcaagttcccaaatcatcgagctcaagttcctgctat
aaatcaattaggttttgtggcacattattatttagatgttctactgtttttgttagtttc
ttcaattgttattacatatcttgccatcagccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGGTGTTCGAATCACTCCCAGAT 384 183 993 Antisense
AACTTTTTATTACTCATGGTGGGCT 601 139 1136 Antisense
GAAAACCTGCAATAGTTGTTCCAAT 549 353 1190 Antisense
GAGATCAACATCATAATGCCGTTAT 707 395 1220 Antisense
GGCAAGGCATGGAGGAGCTGTGGCA 146 535 1248 Antisense
GGAGCTGTGGCATACGACAAGTTTG 224 519 1261 Antisense
AAAACGCGGAGGCTCTGCAACATGT 405 131 1352 Antisense
GCAACATGTGCTATTCAATCAACCA 559 319 1368 Antisense
GCAATCAAGTTCCCAAATCATCGAG 318 323 1432 Antisense
ATCATCGAGCTCAAGTTCCTGCTAT 251 29 1448 Antisense
TTACATATCTTGCCATCAGCCTTCT 352 683 1544 Antisense
Sequence Source Affymetrix Proprietary Database