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[191776_at] UDP-glucuronosyltransferase

Description T19H12.1 /REP_DB=WormBase Gene ID /WP=CE13752 /TR=O01617 /GB=AAC69026.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_high1_10_10 > 57      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_total > 57      4grp_total > 58      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 396.5
(-0.8)
P 		604.8
(2.2)
P 		657.8
(3)
P 		249.6
(-3)
P 		408
B 335.2
(-1.6)
P 		583.2
(3)
P 		537.3
(2.2)
P 		256.7
(-3)
P 		327
C 308.4
(-1.6)
P 		618
(2.6)
P 		646
(3)
P 		208.7
(-3)
P 		437
avr 346.7
(-1.3) 		602
(2.8) 		613.7
(3) 		238.3
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 195.8
(1)
P 		100.8
(-2.6)
P 		89.3
(-3)
P 		93.9
(-2.8)
P 		96.1
(-2.7)
M 		248.8
(3)
P 		160
B 210.5
(0.1)
P 		105.8
(-2.3)
P 		130.6
(-1.7)
P 		92.2
(-2.6)
P 		74
(-3)
P 		335.3
(3)
P 		261
C 171.6
(-1)
P 		164.6
(-1.1)
P 		131.8
(-1.7)
P 		118.4
(-2)
P 		65.5
(-3)
P 		380.3
(3)
P 		315
avr 192.6
(-0.2) 		123.7
(-1.9) 		117.2
(-2) 		101.5
(-2.4) 		78.5
(-3) 		321.5
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 144.4
(1.8)
P 		131.3
(1.2)
P 		172
(3)
P 		36.5
(-3)
P 		136
B 106.9
(0.5)
P 		144
(3)
P 		124.5
(1.7)
P 		54.7
(-3)
P 		89
C 102.1
(-0.9)
P 		177.7
(1.5)
P 		225.1
(3)
P 		35.2
(-3)
P 		190
avr 117.8
(0.4) 		151
(2) 		173.9
(3) 		42.1
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 36.1
(-0.6)
P 		35.8
(-0.6)
P 		19.4
(-3)
P 		23.8
(-2.4)
P 		29
(-1.6)
M 		60.6
(3)
P 		41
B 73.3
(-0.1)
P 		35.2
(-2.4)
P 		31.7
(-2.6)
P 		24.4
(-3)
P 		30.1
(-2.7)
P 		125
(3)
P 		101
C 63.6
(-0.6)
P 		50.2
(-1.4)
P 		33.5
(-2.3)
P 		23.8
(-2.9)
P 		21.2
(-3)
P 		127.3
(3)
P 		106
avr 57.7
(-0.5) 		40.4
(-1.8) 		28.2
(-2.7) 		24
(-3) 		26.8
(-2.8) 		104.3
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15168
Sequence Type Exemplar sequence
Representative Public ID T19H12.1 NCBI
Target Description T19H12.1 /REP_DB=WormBase Gene ID /WP=CE13752 /TR=O01617 /GB=AAC69026.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071911 NCBI Caenorhabditis elegans T19H12.1 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000027986 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4895870:4897722:1 11/11 None
T19H12.1 ENSEMBL cdna:known chromosome:CEL140:V:4895870:4897722:1 gene:T19H12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027981 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4895869-4897722(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-9
Ensembl T19H12.1
Entrez Gene 178883 Entrez gene
SwissProt O01617 EMBL-EBI
WormBase CE13752 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69026 Udp-glucuronosyltransferase protein 9 [Caenorhabditis elegans] ref|NP_504312.1| T19H12.1 [Caenorhabditis elegans] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504312.1 1 499-521
T19H12.1 1 499-521
GENEFINDER00000027986 1 499-521
Sequence
Target Sequence 
>C. ELEGANS:191776_AT
acgtgtgaaactatttgtgacccatggaggactgggaagtacaatggaagtagcttacac
cgggaagccggctctaatggttccaattttcggagatcaaccaaataatgcagatatgct
tgcaagacatggaggtgctgttgcgtacgacaaatttgatctggcagatggagaaaaact
aacaaaaactgttcgggatatggtgacaaactcgaagtatgaggtgaatgcccaggaatt
gttaaaagttctctccaaacaacctattgatcctaagctgaatttgatgaagcatctaga
gtttgcaatggaattcccaaagcaccgttcccaagttccagccataaatagaaccggact
gattgctcactactatcttgatgtaattggtgtcttaacgttggcttcaatttttggttt
gttcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGTGAAACTATTTGTGACCCAT 215 95 1125 Antisense
GGAGGTGCTGTTGCGTACGACAAAT 317 515 1255 Antisense
ATGAGGTGAATGCCCAGGAATTGTT 164 45 1343 Antisense
AAGTTCTCTCCAAACAACCTATTGA 138 157 1370 Antisense
AACAACCTATTGATCCTAAGCTGAA 264 131 1382 Antisense
CAATGGAATTCCCAAAGCACCGTTC 642 181 1430 Antisense
TTCCCAAGTTCCAGCCATAAATAGA 292 697 1452 Antisense
AATAGAACCGGACTGATTGCTCACT 563 171 1471 Antisense
GATTGCTCACTACTATCTTGATGTA 606 433 1485 Antisense
TGGTGTCTTAACGTTGGCTTCAATT 466 551 1512 Antisense
GCTTCAATTTTTGGTTTGTTCGTGA 406 303 1528 Antisense
Sequence Source Affymetrix Proprietary Database