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[191774_at]

Description F22E12.1 /REP_DB=WormBase Gene ID /WP=CE15886 /TR=O45916 /GB=CAA16311.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=BPTI-KUNITZ inhibitor domain
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 67      6grp_total > 53      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1750
1 2 3 4 range
A 2238
(3)
P 		1944.8
(1.9)
P 		1591.7
(0.5)
P 		697.5
(-3)
P 		1541
B 2447.2
(3)
P 		1662.1
(0.2)
P 		1716.3
(0.4)
P 		752.3
(-3)
P 		1695
C 2282
(3)
P 		1666.7
(0.4)
P 		1807.3
(1)
P 		888
(-3)
P 		1394
avr 2322.4
(3) 		1757.9
(0.8) 		1705.1
(0.6) 		779.3
(-3) 		1543

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1132
1 2 3 4 5 6 range
A 1696.6
(-1.5)
P 		1767.2
(-1.2)
P 		2540
(3)
P 		1858.2
(-0.7)
P 		1484.9
(-2.7)
P 		1422.7
(-3)
P 		1117
B 1885.5
(-1.8)
P 		2134.3
(0.2)
P 		2482.4
(3)
P 		1956.8
(-1.3)
P 		1743.7
(-3)
P 		1790.5
(-2.6)
P 		739
C 1408.5
(-3)
P 		1859.4
(1.1)
P 		2073
(3)
P 		1494.9
(-2.2)
P 		1771.3
(0.3)
P 		2016.7
(2.5)
P 		665
avr 1663.5
(-3) 		1920.3
(-0.8) 		2365.1
(3) 		1770
(-2.1) 		1666.6
(-3) 		1743.3
(-2.3) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 713
1 2 3 4 range
A 814.8
(3)
P 		422.2
(-0.3)
P 		416.1
(-0.4)
P 		102.1
(-3)
P 		713
B 780.4
(3)
P 		410.5
(-0.6)
P 		397.7
(-0.7)
P 		160.3
(-3)
P 		620
C 755.4
(3)
P 		479.2
(0.3)
P 		629.9
(1.8)
P 		149.7
(-3)
P 		606
avr 783.5
(3) 		437.3
(-0.2) 		481.2
(0.2) 		137.4
(-3) 		646

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 312.7
(-3)
P 		628.5
(3)
P 		553.2
(1.6)
P 		471.3
(0)
P 		448.1
(-0.4)
P 		346.4
(-2.4)
P 		316
B 656
(1.3)
P 		710.4
(3)
P 		602.8
(-0.4)
P 		518.3
(-3)
P 		708.4
(2.9)
P 		667.7
(1.7)
P 		192
C 522.1
(0.5)
P 		567.4
(1.3)
P 		527.6
(0.6)
P 		300.6
(-3)
P 		573.2
(1.4)
P 		675.1
(3)
P 		375
avr 496.9
(-1) 		635.4
(3) 		561.2
(0.8) 		430.1
(-3) 		576.6
(1.3) 		563.1
(0.9) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11390
Sequence Type Exemplar sequence
Representative Public ID F22E12.1 NCBI
Target Description F22E12.1 /REP_DB=WormBase Gene ID /WP=CE15886 /TR=O45916 /GB=CAA16311.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=BPTI-KUNITZ inhibitor domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182330 NCBI Caenorhabditis elegans Y32F6A.5 (Y32F6A.5) mRNA, complete cds. 11/11 A 
SNAP00000010886 ENSEMBL cdna:SNAP chromosome:CEL140:V:10453951:10456187:-1 11/11 None
GENEFINDER00000010889 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10453951:10456187:-1 11/11 None
Y32F6A.5.1 ENSEMBL cdna:known chromosome:CEL140:V:10453892:10456363:-1 gene:Y32F6A.5 11/11 None
Y32F6A.5.2 ENSEMBL cdna:known chromosome:CEL140:V:10453892:10456187:-1 gene:Y32F6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10453950-10459904(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32F6A.5
Entrez Gene 179459 Entrez gene
SwissProt Q8I4E3 EMBL-EBI
WormBase CE32010 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13926_AT serine carboxypeptidase S10 family protein at
ATH1-121501:264071_AT serine carboxypeptidase S10 family protein at
CANINE:1592178_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE:1591561_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE_2:CFA.13261.1.A1_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE_2:CFA.18809.1.S1_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE_2:CFA.18809.2.S1_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE_2:CFA.18809.2.S1_S_AT similar to serine carboxypeptidase 1 precursor protein cfa
CANINE_2:CFA.18986.1.S1_S_AT similar to serine carboxypeptidase 1 precursor protein cfa
DROSOPHILA_2:1632584_AT dm
DROSGENOME1:152830_AT dm
CHICKEN:GGA.18939.1.S1_AT serine carboxypeptidase 1 gga
HG-U133_PLUS_2:218217_AT serine carboxypeptidase 1 hs
HG-U133A:218217_AT serine carboxypeptidase 1 hs
HG-FOCUS:218217_AT serine carboxypeptidase 1 hs
HG-U133A_2:218217_AT serine carboxypeptidase 1 hs
HU35KSUBD:RC_AA599850_AT serine carboxypeptidase 1 hs
U133_X3P:G11055991_3P_AT serine carboxypeptidase 1 hs
U133_X3P:HS2.431107.1.S1_3P_AT serine carboxypeptidase 1 hs
HG-U133_PLUS_2:1560665_AT serine carboxypeptidase 1 hs
HG-U95B:48060_AT serine carboxypeptidase 1 hs
MG-U74AV2:98042_AT serine carboxypeptidase 1 mm
MOE430A:1426555_AT serine carboxypeptidase 1 mm
MOUSE430A_2:1426555_AT serine carboxypeptidase 1 mm
MOUSE430_2:1426555_AT serine carboxypeptidase 1 mm
MOE430A:1455908_A_AT serine carboxypeptidase 1 mm
MOUSE430A_2:1455908_A_AT serine carboxypeptidase 1 mm
MOUSE430_2:1455908_A_AT serine carboxypeptidase 1 mm
MU19KSUBA:TC15444_AT Serine carboxypeptidase 1 (Scpep1), mRNA mm
MU19KSUBA:TC24951_AT Serine carboxypeptidase 1 (Scpep1), mRNA mm
MU19KSUBB:TC31651_AT Serine carboxypeptidase 1 (Scpep1), mRNA mm
RG-U34C:RC_AA819533_AT serine carboxypeptidase 1 rn
RAE230A:1370220_AT serine carboxypeptidase 1 rn
RAT230_2:1370220_AT serine carboxypeptidase 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD54164 Hypothetical protein Y32F6A.5 [Caenorhabditis elegans] ref|NP_872130.1| Y32F6A.5 [Caenorhabditis elegans] 0.0
blast CAE64812 Hypothetical protein CBG09606 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 7.7E-88
Sequence
Target Sequence 
>C. ELEGANS:191774_AT
acgaatgatgtctcttggtataatattctgaagaaaggagatactgatgactggagttca
tctgcaatgagatcaaatagagtgatgacttcaactcgtagattgtataatcgattcgtt
gctccacagaatttggattctctttcaaattacatggatacagttgttcgcaagaagttg
ggaattattccggataaggtgaagttcggaggacaagctggagacgtgttcagttatcaa
caaggagactttatgacaccaatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAATGATGTCTCTTGGTATAATA 229 93 3049 Antisense
AGGAGATACTGATGACTGGAGTTCA 120 55 3084 Antisense
GACTGGAGTTCATCTGCAATGAGAT 134 377 3097 Antisense
CTTCAACTCGTAGATTGTATAATCG 80 223 3137 Antisense
ATAATCGATTCGTTGCTCCACAGAA 603 25 3155 Antisense
GCTCCACAGAATTTGGATTCTCTTT 151 299 3169 Antisense
TTCTCTTTCAAATTACATGGATACA 523 691 3186 Antisense
ACATGGATACAGTTGTTCGCAAGAA 372 107 3200 Antisense
GAAGTTCGGAGGACAAGCTGGAGAC 297 337 3249 Antisense
GCTGGAGACGTGTTCAGTTATCAAC 173 295 3265 Antisense
GGAGACTTTATGACACCAATTTGGA 548 519 3292 Antisense
Sequence Source Affymetrix Proprietary Database