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[191773_at]

Description R09E10.2 /REP_DB=WormBase Gene ID /WP=CE06284 /TR=Q21877 /GB=CAA94303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 90      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 19.3
(-1.6)
A 		41
(3)
A 		12.4
(-3)
A 		36.8
(2.1)
A 		29
B 15.6
(-2.8)
A 		15
(-3)
A 		32.5
(1.5)
A 		38.1
(3)
A 		23
C 28.1
(-2.1)
A 		37.4
(-0.8)
A 		21.8
(-3)
A 		64.8
(3)
A 		43
avr 21
(-3) 		31.1
(-0.6) 		22.2
(-2.7) 		46.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 12.4
(-3)
A 		28
(1.8)
A 		23.6
(0.4)
A 		27.2
(1.5)
A 		32.1
(3)
A 		17.3
(-1.5)
A 		20
B 19.5
(1.5)
A 		7.8
(-1.9)
A 		3.8
(-3)
A 		24.7
(3)
A 		15.5
(0.4)
A 		24.7
(3)
A 		21
C 18
(-1.6)
A 		55.1
(3)
A 		6.5
(-3)
A 		38.8
(1)
A 		17.7
(-1.6)
A 		44.5
(1.7)
A 		49
avr 16.6
(-1.3) 		30.3
(3) 		11.3
(-3) 		30.2
(3) 		21.8
(0.3) 		28.8
(2.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7
(1)
A 		8.9
(3)
A 		3.2
(-3)
A 		5.4
(-0.7)
A 		6
B 5
(-1.2)
A 		3.7
(-3)
A 		7.5
(2.2)
A 		8.1
(3)
A 		4
C 9.3
(0.1)
A 		10.8
(2.8)
A 		7.6
(-3)
A 		10.9
(3)
A 		3
avr 7.1
(0) 		7.8
(2.1) 		6.1
(-3) 		8.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.3
(-3)
A 		10
(3)
A 		5.1
(-0.8)
A 		6.9
(0.6)
A 		9.7
(2.8)
A 		4.2
(-1.5)
A 		8
B 6.8
(1.3)
A 		2.6
(-1.8)
A 		0.9
(-3)
A 		6.5
(1)
A 		6.3
(0.9)
A 		9.2
(3)
A 		8
C 6.7
(-1)
A 		16.8
(3)
A 		1.7
(-3)
A 		7.8
(-0.6)
A 		5.7
(-1.4)
A 		14.9
(2.2)
A 		15
avr 5.3
(-0.8) 		9.8
(3) 		2.6
(-3) 		7.1
(0.8) 		7.2
(0.8) 		9.4
(2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8403
Sequence Type Exemplar sequence
Representative Public ID R09E10.2 NCBI
Target Description R09E10.2 /REP_DB=WormBase Gene ID /WP=CE06284 /TR=Q21877 /GB=CAA94303.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028164 NCBI Caenorhabditis elegans R09E10.9 (R09E10.9) mRNA, complete cds. 11/11 None
SNAP00000005973 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10310769:10315827:-1 11/11 None
GENEFINDER00000005984 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10314973:10315827:-1 11/11 None
R09E10.9 ENSEMBL cdna:known chromosome:CEL140:IV:10314964:10317168:-1 gene:R09E10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10314978-10318229(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09E10.9
Entrez Gene 259339 Entrez gene
SwissProt Q6BEU1 EMBL-EBI
WormBase CE36604 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH04747 Hypothetical protein R09E10.9 [Caenorhabditis elegans] ref|NP_001023335.1| R09E10.9 [Caenorhabditis elegans] 0.0
blast CAA94298 Hypothetical protein R09E10.3 [Caenorhabditis elegans] ref|NP_501893.1| R09E10.3 [Caenorhabditis elegans] 0.0
blast CAE60718 Hypothetical protein CBG04390 [Caenorhabditis briggsae] 0.0
blast AAB66234 Hypothetical protein R07C3.4 [Caenorhabditis elegans] ref|NP_493856.1| R07C3.4 [Caenorhabditis elegans] 0.0
blast CAA92995 Hypothetical protein F36H1.3 [Caenorhabditis elegans] ref|NP_502058.1| F36H1.3 [Caenorhabditis elegans] 1.0E-162
blast CAE72543 Hypothetical protein CBG19727 [Caenorhabditis briggsae] 1.0E-135
blast CAH04747 Hypothetical protein R09E10.9 [Caenorhabditis elegans] ref|NP_001023335.1| R09E10.9 [Caenorhabditis elegans] 4.0E-83
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-55
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-21
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 5.7E-35
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.3E-40
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.4E-24
Sequence
Target Sequence 
>C. ELEGANS:191773_AT
ttgcggccatcgaagttggtatccaatatcttctgaatggaaaagcttttcgaccagcag
acttagtgagagctgtcagacactgtcgcttgaacagtgttcaaatggacacgcagtatt
tgatgctggttgaggcgattctggattttggtgtcgcgttcaagtacatcgaagattcga
aactcctggatgcaattgatatttataagaaacaggtgtcagattatgttgaagctcatc
cgcctccactggaaatgttcaaggcaccgcctaaaatcgagaaggacggagatgacggag
tatcaccatccccagttccagtcagcactccaccagtgccttcaactattccaagtccat
ccaaagttgttccaaatccaccacaaaagtcgctaattactccaactgttccaccttcga
tgatccagactgtaaatcctccaacagtgtctgctctcccatctccatctgtttctcctg
ctccagtgccaacaacctcatgtgctcctcagaaaccgttggtcgttcaacctccagtcc
cgtttgctccgaatctggcagcccagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGGCCATCGAAGTTGGTATCCA 526 701 1253 Antisense
GAAAAGCTTTTCGACCAGCAGACTT 205 355 1292 Antisense
GATGCTGGTTGAGGCGATTCTGGAT 30 415 1374 Antisense
GATTCTGGATTTTGGTGTCGCGTTC 663 431 1389 Antisense
GAAGATTCGAAACTCCTGGATGCAA 42 339 1423 Antisense
AGATGACGGAGTATCACCATCCCCA 480 67 1542 Antisense
GTCCATCCAAAGTTGTTCCAAATCC 672 475 1607 Antisense
TCGCTAATTACTCCAACTGTTCCAC 513 599 1642 Antisense
TAAATCCTCCAACAGTGTCTGCTCT 119 641 1685 Antisense
TCATGTGCTCCTCAGAAACCGTTGG 168 623 1750 Antisense
TTGCTCCGAATCTGGCAGCCCAGAC 38 701 1796 Antisense
Sequence Source Affymetrix Proprietary Database