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[191772_at]

Description C02F5.7 /REP_DB=WormBase Gene ID /WP=CE24780 /TR=SW:P34284 /GB=AAA27922.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Glucose-induced repressor
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 55      6grp_total > 70      4grp_total > 05      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4383
1 2 3 4 range
A 2334.8
(-0.5)
P 		1107.1
(-2.6)
P 		851.9
(-3)
P 		4437.8
(3)
P 		3586
B 2137
(-1.1)
P 		1039.1
(-2.6)
P 		730.1
(-3)
P 		5113.4
(3)
P 		4383
C 2256.7
(-0.6)
P 		1115.7
(-2.8)
P 		1018.5
(-3)
P 		4142.3
(3)
P 		3124
avr 2242.8
(-0.8) 		1087.3
(-2.6) 		866.8
(-3) 		4564.5
(3) 		3698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1213
1 2 3 4 5 6 range
A 1725.9
(-1.3)
P 		1491.7
(-3)
P 		1624.2
(-2)
P 		2299.6
(3)
P 		2023.3
(0.9)
P 		1574.2
(-2.4)
P 		808
B 1535.4
(-2.8)
P 		1495.4
(-3)
P 		1921.5
(-0.7)
P 		2627.1
(3)
P 		1619
(-2.3)
P 		1566.9
(-2.6)
P 		1132
C 1521.8
(-2.4)
P 		1430.9
(-2.9)
P 		1816.2
(-0.7)
P 		2452.4
(3)
P 		1804.7
(-0.7)
P 		1414
(-3)
P 		1038
avr 1594.4
(-2.3) 		1472.7
(-3) 		1787.3
(-1.1) 		2459.7
(3) 		1815.7
(-0.9) 		1518.4
(-2.7) 		987
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 921
1 2 3 4 range
A 850.1
(3)
P 		240.3
(-2.8)
P 		222.7
(-3)
P 		649.6
(1.1)
P 		627
B 681.5
(0.3)
P 		256.6
(-2.4)
P 		169.2
(-3)
P 		1089.7
(3)
P 		921
C 747
(3)
P 		320.8
(-3)
P 		355
(-2.5)
P 		698.5
(2.3)
P 		426
avr 759.5
(2.4) 		272.6
(-2.7) 		249
(-3) 		812.6
(3) 		564

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 318.2
(-3)
P 		530.5
(1.4)
P 		353.7
(-2.3)
P 		583.2
(2.4)
P 		610.5
(3)
P 		383.3
(-1.7)
P 		292
B 534.2
(-1.2)
P 		497.7
(-2.2)
P 		466.6
(-3)
P 		695.8
(3)
P 		657.8
(2)
P 		584.3
(0.1)
P 		229
C 564.1
(2.2)
P 		436.6
(-3)
P 		462.2
(-2)
P 		493.2
(-0.7)
P 		584
(3)
P 		473.3
(-1.5)
P 		147
avr 472.2
(-1.6) 		488.3
(-1.1) 		427.5
(-3) 		590.7
(2.2) 		617.4
(3) 		480.3
(-1.3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6697
Sequence Type Exemplar sequence
Representative Public ID C02F5.7 NCBI
Target Description C02F5.7 /REP_DB=WormBase Gene ID /WP=CE24780 /TR=SW:P34284 /GB=AAA27922.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Glucose-induced repressor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066398(11), NM_171211(11), NM_171210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066398 NCBI Caenorhabditis elegans Rad-51 (Fifty one) like, Short family member (rfs-1) (rfs-1) mRNA, complete cds. 11/11 None
NM_171211 NCBI Caenorhabditis elegans C02F5.7a (C02F5.7) mRNA, complete cds. 11/11 None
NM_171210 NCBI Caenorhabditis elegans C02F5.7b (C02F5.7) mRNA, complete cds. 11/11 None
SNAP00000031501 ENSEMBL cdna:SNAP chromosome:CEL140:III:8229789:8231755:1 11/11 None
GENEFINDER00000031520 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8229789:8232204:1 9/11 None
C30A5.2 ENSEMBL cdna:known chromosome:CEL140:III:8226394:8232470:1 gene:C30A5.2 11/11 None
C02F5.7a.3 ENSEMBL cdna:known chromosome:CEL140:III:8229641:8232460:1 gene:C02F5.7 11/11 None
C02F5.7a.2 ENSEMBL cdna:known chromosome:CEL140:III:8229706:8232469:1 gene:C02F5.7 11/11 A 
C02F5.7a.1 ENSEMBL cdna:known chromosome:CEL140:III:8229707:8232469:1 gene:C02F5.7 11/11 A 
C02F5.7b ENSEMBL cdna:known chromosome:CEL140:III:8229789:8232827:1 gene:C02F5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8229784-8231751(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rfs-1
Ensembl C30A5.2
C02F5.7
Entrez Gene 3565472 Entrez gene
SwissProt P34348 EMBL-EBI
WormBase CE00094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27922 Hypothetical protein C02F5.7a [Caenorhabditis elegans] ref|NP_741249.1| C02F5.7a [Caenorhabditis elegans] 0.0
blast AAM15540 Hypothetical protein C02F5.7b [Caenorhabditis elegans] ref|NP_741248.1| C02F5.7b [Caenorhabditis elegans] sp|P34284|YKK7_CAEEL Hypothetical F-box/LRR-repeat protein C02F5.7 0.0
blast CAE70185 Hypothetical protein CBG16659 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.021
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.058
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.046
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-8
Sequence
Target Sequence 
>C. ELEGANS:191772_AT
cttccagctcaccgatattacagttcaaaatattgcaaatggagctaccgctttggaata
tctgtgcatgtcaaattgcaatcaaatatctgatagatcattggtatctcttggacaaca
ttctcataatttgaaagtactggaattatctggatgcacacttctcggagataatggatt
tattccacttgccagaggatgtcgtcaattggaacgacttgatatggaagattgttccct
aatttctgatcacactatcaactcacttgcaaacaactgtacggctcttcgtgagctcag
tctttcacattgcgaacttattacggacgagtcgattcagaatttagcctcgaaacaccg
tgaaacgttgaatgttctggaacttgacaattgcccgcagttaactgattccacgttatc
tcatctgagacattgcaaagctctcaagagaattgatttgtatgattgccaaaatgtttc
aaaagaagcaatcgttcgatttcagcatcatcgcccaaacatcgaaattcatgcctattt
tgcaccggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCAGCTCACCGATATTACAGTT 396 219 801 Antisense
GGAGCTACCGCTTTGGAATATCTGT 22 517 841 Antisense
AATTATCTGGATGCACACTTCTCGG 3 177 944 Antisense
GATCACACTATCAACTCACTTGCAA 643 421 1048 Antisense
ACTGTACGGCTCTTCGTGAGCTCAG 165 97 1076 Antisense
TGAGCTCAGTCTTTCACATTGCGAA 349 569 1092 Antisense
GAATTTAGCCTCGAAACACCGTGAA 285 323 1140 Antisense
CTGGAACTTGACAATTGCCCGCAGT 418 241 1177 Antisense
GATTCCACGTTATCTCATCTGAGAC 687 433 1207 Antisense
TCAGCATCATCGCCCAAACATCGAA 348 625 1302 Antisense
AATTCATGCCTATTTTGCACCGGTC 136 177 1326 Antisense
Sequence Source Affymetrix Proprietary Database