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[191771_s_at]

Description T08B2.9 /REP_DB=WormBase Gene ID /WP=CE13435 /TR=Q9GYS8 /GB=AAG00015.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phenylalanyl-tRNA synthetase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 57      6grp_total > 41      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3103
1 2 3 4 range
A 2638.9
(0.8)
P 		3049.6
(1.7)
P 		3653.9
(3)
P 		878.3
(-3)
P 		2776
B 2237.3
(-0.6)
P 		3693
(2.7)
P 		3846.6
(3)
P 		1183.9
(-3)
P 		2663
C 2578.1
(0.3)
P 		2969.8
(1.1)
P 		3959.8
(3)
P 		857.1
(-3)
P 		3103
avr 2484.8
(0.2) 		3237.5
(1.8) 		3820.1
(3) 		973.1
(-3) 		2847

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 871
1 2 3 4 5 6 range
A 2188.1
(-0.1)
P 		2290.3
(1.5)
P 		2388.3
(3)
P 		2280.6
(1.4)
P 		1996.4
(-3)
P 		2317.6
(1.9)
P 		392
B 2368
(-0.3)
P 		2416.2
(0.2)
P 		2710.1
(3)
P 		2292.6
(-1)
P 		2092
(-2.9)
P 		2086.7
(-3)
P 		623
C 2528.2
(0.1)
P 		2263.1
(-2.1)
P 		2867.3
(3)
P 		2791.2
(2.4)
P 		2167.7
(-2.9)
P 		2157.1
(-3)
P 		710
avr 2361.4
(-0.1) 		2323.2
(-0.5) 		2655.2
(3) 		2454.8
(0.9) 		2085.4
(-3) 		2187.1
(-1.9) 		570
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1252
1 2 3 4 range
A 960.8
(3)
P 		662
(0.8)
P 		955.2
(3)
P 		128.6
(-3)
P 		832
B 713.5
(1.2)
P 		912.1
(3)
P 		891.3
(2.8)
P 		252.3
(-3)
P 		660
C 853.4
(0.4)
P 		853.8
(0.4)
P 		1380.1
(3)
P 		144.5
(-3)
P 		1236
avr 842.6
(1.4) 		809.3
(1.2) 		1075.5
(3) 		175.1
(-3) 		900

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 403.4
(-3)
P 		814.6
(3)
P 		520.1
(-1.3)
P 		578.4
(-0.4)
P 		602.4
(-0.1)
P 		564.3
(-0.7)
P 		411
B 824
(2.4)
P 		804.2
(1.9)
P 		658.1
(-1.7)
P 		607.2
(-3)
P 		849.9
(3)
P 		778.1
(1.2)
P 		243
C 937.1
(3)
P 		690.5
(-0.9)
P 		729.8
(-0.3)
P 		561.3
(-3)
P 		701.4
(-0.8)
P 		722.1
(-0.4)
P 		376
avr 721.5
(1.5) 		769.8
(3) 		636
(-1.3) 		582.3
(-3) 		717.9
(1.3) 		688.2
(0.4) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191771_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1810
Sequence Type Exemplar sequence
Representative Public ID T08B2.9 NCBI
Target Description T08B2.9 /REP_DB=WormBase Gene ID /WP=CE13435 /TR=Q9GYS8 /GB=AAG00015.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phenylalanyl-tRNA synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059391(11), NM_182004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059391 NCBI Caenorhabditis elegans phenylalanyl (F) tRNA Synthetase family member (frs-1) (frs-1) mRNA, complete cds. 11/11 A 
NM_182004 NCBI Caenorhabditis elegans phenylalanyl (F) tRNA Synthetase family member (frs-1) (frs-1) mRNA, complete cds. 11/11 A 
SNAP00000035003 ENSEMBL cdna:SNAP chromosome:CEL140:I:6219497:6222710:-1 11/11 None
GENEFINDER00000035017 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6220272:6222710:-1 11/11 None
T08B2.9a ENSEMBL cdna:known chromosome:CEL140:I:6220120:6222721:-1 gene:T08B2.9 11/11 None
T08B2.9b.2 ENSEMBL cdna:known chromosome:CEL140:I:6220272:6222353:-1 gene:T08B2.9 11/11 A 
T08B2.9b.3 ENSEMBL cdna:known chromosome:CEL140:I:6220272:6222712:-1 gene:T08B2.9 11/11 None
T08B2.9b.1 ENSEMBL cdna:known chromosome:CEL140:I:6220272:6222351:-1 gene:T08B2.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6220200-6222639(-) 100.0 100.0
Public Domain and Genome References
Ensembl T08B2.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491792 phenylalanyl (F) tRNA Synthetase family member (frs-1) [Caenorhabditis elegans] gb|AAG00015.1| Phenylalanyl (f) trna synthetase protein 1, isoform a [Caenorhabditis elegans] 0.0
blast CAE67141 Hypothetical protein CBG12564 [Caenorhabditis briggsae] 0.0
blast NP_871804 phenylalanyl (F) tRNA Synthetase family member (frs-1) [Caenorhabditis elegans] gb|AAO21394.1| Phenylalanyl (f) trna synthetase protein 1, isoform b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002319 EMBL-EBI Phenylalanyl-tRNA synthetase, class IIc 1.0E-126
Pfam IPR002319 EMBL-EBI Phenylalanyl-tRNA synthetase, class IIc 1.0E-126
Pfam IPR002319 EMBL-EBI Phenylalanyl-tRNA synthetase, class IIc 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191771_S_AT
tgttcttagaacccatacaaccgccgtatctgctcggcagttgtaccagctagctcagga
aggtttccgtccatctaaactattctcgattgaccgtgtttttcgtaatgagactctcga
cgctacacatttggccgagttccatcaagtagaaggagtaattgctgagaaaaatctcag
tttggctcatcttatcggaatcttcaccgagttcttcaagaaattgggaatcaccaatct
tcgtttcaagccaacatacaatccatataccgagccgagtatggaaattttcgcgtacca
tcaaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTTAGAACCCATACAACCGCC 692 561 1146 Antisense
CTGCTCGGCAGTTGTACCAGCTAGC 394 237 1175 Antisense
TTCCGTCCATCTAAACTATTCTCGA 524 697 1210 Antisense
CTATTCTCGATTGACCGTGTTTTTC 676 221 1225 Antisense
AATGAGACTCTCGACGCTACACATT 134 165 1252 Antisense
GCTACACATTTGGCCGAGTTCCATC 458 301 1267 Antisense
AAATCTCAGTTTGGCTCATCTTATC 79 119 1317 Antisense
GGCTCATCTTATCGGAATCTTCACC 474 537 1329 Antisense
GAATCACCAATCTTCGTTTCAAGCC 697 327 1373 Antisense
ATACAATCCATATACCGAGCCGAGT 506 23 1401 Antisense
GAAATTTTCGCGTACCATCAAGGAC 556 363 1429 Antisense
Sequence Source Affymetrix Proprietary Database