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[191770_at] G-protein coupled receptor, str family

Description Y102A5C.28 /REP_DB=WormBase Gene ID /WP=CE25158 /TR=Q9XX85 /GB=CAA20950.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (str family)
Cluster 6grp_total > 74      4grp_total > 19      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 44.7
(-1.8)
A 		26.8
(-3)
A 		42.5
(-2)
A 		119.1
(3)
P 		92
B 31.7
(-3)
A 		80
(3)
A 		50.7
(-0.6)
A 		37.6
(-2.3)
A 		48
C 67.5
(1.6)
A 		73.3
(2.1)
A 		19.8
(-3)
A 		82.5
(3)
A 		63
avr 48
(-1.5) 		60
(0.2) 		37.7
(-3) 		79.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 44.6
(-1.5)
A 		26
(-3)
A 		62.8
(0.1)
P 		47.8
(-1.2)
A 		54.5
(-0.6)
A 		98.3
(3)
A 		72
B 51.5
(-0.1)
A 		39.4
(-2.7)
A 		52
(-0)
A 		66.3
(3)
A 		43.2
(-1.9)
A 		37.9
(-3)
A 		28
C 21
(-3)
A 		65.1
(3)
M 		40.7
(-0.3)
A 		56.5
(1.8)
A 		47.8
(0.6)
A 		41.9
(-0.2)
A 		44
avr 39
(-3) 		43.5
(-1.7) 		51.8
(0.8) 		56.9
(2.3) 		48.5
(-0.2) 		59.4
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.3
(2.4)
A 		5.8
(-3)
A 		11.1
(-0.3)
A 		17.4
(3)
P 		12
B 10.1
(-1.9)
A 		19.8
(3)
A 		11.7
(-1.1)
A 		8
(-3)
A 		12
C 22.3
(3)
A 		21.1
(2.5)
A 		6.9
(-3)
A 		13.9
(-0.3)
A 		15
avr 16.2
(3) 		15.6
(2.4) 		9.9
(-3) 		13.1
(0) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.2
(-3)
A 		9.2
(-2.6)
A 		13.7
(-0.9)
P 		12.1
(-1.5)
A 		16.5
(0.2)
A 		23.9
(3)
A 		16
B 17.9
(3)
A 		13.1
(-2.4)
A 		12.6
(-3)
A 		17.6
(2.7)
A 		17.5
(2.5)
A 		14.1
(-1.3)
A 		5
C 7.8
(-3)
A 		19.9
(3)
M 		10.4
(-1.7)
A 		11.4
(-1.2)
A 		15.5
(0.8)
A 		14
(0.1)
A 		12
avr 11.3
(-3) 		14.1
(-0.2) 		12.2
(-2.1) 		13.7
(-0.6) 		16.5
(2.2) 		17.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13944
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.28 NCBI
Target Description Y102A5C.28 /REP_DB=WormBase Gene ID /WP=CE25158 /TR=Q9XX85 /GB=CAA20950.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (str family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074899 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-217) (str-217) mRNA, complete cds. 11/11 None
SNAP00000003167 ENSEMBL cdna:SNAP chromosome:CEL140:V:16997519:17002882:-1 10/11 None
GENEFINDER00000003200 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17000499:17002882:-1 9/11 None
Y102A5C.28 ENSEMBL cdna:known chromosome:CEL140:V:17001511:17002882:-1 gene:Y102A5C.28 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17001510-17002882(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, str family
Gene Symbol str-217
Ensembl Y102A5C.28
Entrez Gene 190851 Entrez gene
SwissProt Q9XX85 EMBL-EBI
WormBase CE25158 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491240 T03F1.4 [Caenorhabditis elegans] gb|AAB42240.2| Hypothetical protein T03F1.4 [Caenorhabditis elegans] 0.0
blast AAB71256 Hypothetical protein T23E7.1 [Caenorhabditis elegans] ref|NP_510849.1| T23E7.1 [Caenorhabditis elegans] 0.0
blast tpe|CAJ00230.1 TPA: gag-pol polyprotein [Schistosoma mansoni] 0.0
blast CAA20950 Hypothetical protein Y102A5C.28 [Caenorhabditis elegans] ref|NP_507300.1| Seven TM Receptor family member (str-217) [Caenorhabditis elegans] 1.0E-180
blast CAA20950 Hypothetical protein Y102A5C.28 [Caenorhabditis elegans] ref|NP_507300.1| Seven TM Receptor family member (str-217) [Caenorhabditis elegans] 1.0E-156
blast CAB04005 Hypothetical protein C55A1.1 [Caenorhabditis elegans] ref|NP_506885.2| C55A1.1 [Caenorhabditis elegans] 1.0E-109
blast CAB04005 Hypothetical protein C55A1.1 [Caenorhabditis elegans] ref|NP_506885.2| C55A1.1 [Caenorhabditis elegans] 1.0E-107
blast CAE71647 Hypothetical protein CBG18618 [Caenorhabditis briggsae] 6.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 1.9E-44
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 9.9E-6
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.4E-24
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 9.9E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507300.1 6 7-29,86-108,129-151,196-218,245-267,282-301
Y102A5C.28 6 7-29,86-108,129-151,196-218,245-267,282-301
SNAP00000003167 5 7-29,86-108,129-151,196-218,245-267
GENEFINDER00000003200 6 7-29,86-108,129-151,196-218,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:191770_AT
ttggtagcatggggaccgcttgcatcatttccagagatggatattgttgtgaggcctttt
ctgttggatgagttaaatatgacggtggacgaggtcgcttacactggccgactgttctat
tcgacgattgataattcattgcggtattctgctatattaacaggtgtgctgcagtgggta
ctaacggcctcttcgcttttcctagtgatcttttttggtcttcgttgttatttccattat
ggaaaactagtgcaacttacggatgtacaatccatacggttgagacagctacagaatcaa
ttgtttttggctttggtgtgccaggcaaccgttccactcatcttaatgcatatcccagtc
acaatactttacacatgctgcgtgctgaacattgtgttcaacccgttctctgttgccacg
acaattgcattattcccagcgattgatccgcttccaacgattttcattgtgaaaaactat
cgagtagctttgtttgaatttgtttgtccgtcgtgcctttgttggtcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTAGCATGGGGACCGCTTGCAT 219 709 445 Antisense
TGTTGTGAGGCCTTTTCTGTTGGAT 144 563 489 Antisense
TACACTGGCCGACTGTTCTATTCGA 176 643 544 Antisense
TTCGCTTTTCCTAGTGATCTTTTTT 374 697 636 Antisense
GATCTTTTTTGGTCTTCGTTGTTAT 74 419 651 Antisense
TTTGGTGTGCCAGGCAACCGTTCCA 292 667 756 Antisense
GTCACAATACTTTACACATGCTGCG 375 465 802 Antisense
GAACATTGTGTTCAACCCGTTCTCT 150 351 831 Antisense
TGCATTATTCCCAGCGATTGATCCG 559 577 870 Antisense
ATTGATCCGCTTCCAACGATTTTCA 362 5 886 Antisense
TCCGTCGTGCCTTTGTTGGTCGGAA 423 595 951 Antisense
Sequence Source Affymetrix Proprietary Database