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[191767_at]

Description F55H12.2 /REP_DB=WormBase Gene ID /WP=CE11208 /TR=Q9XVM4 /GB=CAB03141.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 56.5
(-1.5)
A 		41.8
(-2.8)
A 		40.1
(-3)
A 		107.2
(3)
A 		67
B 42.9
(-1.5)
A 		62.3
(0.6)
A 		28.9
(-3)
A 		84.1
(3)
A 		55
C 39.7
(-3)
A 		88
(3)
A 		59.2
(-0.6)
A 		60.3
(-0.4)
A 		48
avr 46.4
(-2.5) 		64
(0.1) 		42.7
(-3) 		83.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 15.3
(-2.9)
A 		12.1
(-3)
A 		20.1
(-2.7)
A 		60.1
(-1.3)
A 		143.7
(1.6)
P 		185
(3)
P 		173
B 18.7
(-2.6)
A 		28.3
(-2.3)
A 		6.2
(-3)
A 		25.4
(-2.4)
A 		154.5
(1.5)
P 		204.1
(3)
P 		198
C 37.8
(-2.8)
A 		38.4
(-2.7)
A 		28.8
(-3)
A 		46
(-2.5)
A 		123.7
(-0.5)
P 		252.1
(3)
P 		223
avr 23.9
(-2.8) 		26.3
(-2.8) 		18.4
(-3) 		43.8
(-2.2) 		140.6
(0.8) 		213.7
(3) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.6
(3)
A 		9.1
(-3)
A 		10.5
(-2.3)
A 		15.7
(0.4)
A 		12
B 13.7
(0.8)
A 		15.4
(1.7)
A 		6.7
(-3)
A 		17.9
(3)
A 		11
C 13.1
(-1.8)
A 		25.3
(3)
A 		20.6
(1.1)
A 		10.2
(-3)
A 		15
avr 15.8
(1.8) 		16.6
(3) 		12.6
(-3) 		14.6
(-0) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.3
(-2.8)
A 		4.4
(-2.8)
A 		15.3
(-1.2)
A 		43.4
(2.8)
P 		45.1
(3)
P 		42
B 6.5
(-2.6)
A 		9.4
(-2.4)
A 		1.5
(-3)
A 		6.7
(-2.6)
A 		62.8
(1.9)
P 		76.1
(3)
P 		75
C 14
(-2.5)
A 		11.7
(-2.7)
A 		7.3
(-3)
A 		9.3
(-2.8)
A 		40
(-0.5)
P 		84.4
(3)
P 		77
avr 7.8
(-2.7) 		8.5
(-2.6) 		4.4
(-3) 		10.4
(-2.4) 		48.7
(1.1) 		68.5
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1461
Sequence Type Exemplar sequence
Representative Public ID F55H12.2 NCBI
Target Description F55H12.2 /REP_DB=WormBase Gene ID /WP=CE11208 /TR=Q9XVM4 /GB=CAB03141.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059994 NCBI Caenorhabditis elegans F55H12.5 (F55H12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000036159 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8876101:8879600:1 11/11 None
SNAP00000036151 ENSEMBL cdna:SNAP chromosome:CEL140:I:8878231:8879600:1 11/11 None
F55H12.5 ENSEMBL cdna:known chromosome:CEL140:I:8877865:8879600:1 gene:F55H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8876031-8879531(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55H12.5
Entrez Gene 172700 Entrez gene
SwissProt Q8I4I0 EMBL-EBI
WormBase CE32441 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD56588 Hypothetical protein F55H12.5 [Caenorhabditis elegans] ref|NP_492395.2| F55H12.5 [Caenorhabditis elegans] 1.0E-157
blast CAE72172 Hypothetical protein CBG19279 [Caenorhabditis briggsae] 1.0E-114
blast CAB03141 Hypothetical protein F55H12.2 [Caenorhabditis elegans] ref|NP_871889.1| F55H12.2 [Caenorhabditis elegans] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.8E-12
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.8E-12
Sequence
Target Sequence 
>C. ELEGANS:191767_AT
aaatgtctggctttacgacgccacccgtgtcattgttcctggtgtggactactaccatgc
ttcttgggttgatgggcttaagccaaatcaatacattcttgctcaagctccacgtgatgc
cagcgcagccaaggacttttttaaacttttggagcacgtgaaggctgaaggtcttattgt
tgctgaaggagcggacgagttttcaagtgcaataacggcaaaatttgaaaaaggaacagg
gaaaaatgatttcgtgtcaactgccgtcatcaaggaaaacggtctgcatttgaaagcaat
caagttttgtcgttgggctgaaccactttcggcaattgaaatcaatgatatgttggagaa
aagtcgaaagtatttgggatgcccattgaagggtcctttggttattgtgtgcaaagatgg
agctgcaaaaagcggtttagtggcttttatcgatacggaagcggatcgtttgatgaaaca
cgggaaggccaagcacactgacactatcaaacaaattcgtttcatgagaagcaatacgtt
tgatacattcgacagctacgatcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTCTGGCTTTACGACGCCACC 621 119 414 Antisense
CCACCCGTGTCATTGTTCCTGGTGT 518 271 434 Antisense
GGACTACTACCATGCTTCTTGGGTT 661 523 459 Antisense
CCAGCGCAGCCAAGGACTTTTTTAA 112 273 533 Antisense
GGAGCGGACGAGTTTTCAAGTGCAA 676 519 601 Antisense
TCGTGTCAACTGCCGTCATCAAGGA 456 605 665 Antisense
CAAGTTTTGTCGTTGGGCTGAACCA 101 185 714 Antisense
GGATGCCCATTGAAGGGTCCTTTGG 419 511 790 Antisense
GCGGTTTAGTGGCTTTTATCGATAC 425 287 845 Antisense
ACACGGGAAGGCCAAGCACACTGAC 204 109 891 Antisense
GATACATTCGACAGCTACGATCTTG 666 423 955 Antisense
Sequence Source Affymetrix Proprietary Database