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[191764_at] protein-tyrosine phophatase

Description C33H5.16 /REP_DB=WormBase Gene ID /WP=CE04159 /TR=Q18415 /GB=AAA82276.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phophatase
Cluster 6grp_total > 89      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 42.1
(-3)
A 		65.1
(-0.3)
A 		93.4
(3)
A 		80.1
(1.4)
A 		51
B 35.8
(-2.4)
A 		35.7
(-2.4)
A 		94.2
(3)
A 		29.3
(-3)
A 		65
C 25.9
(-2.1)
A 		33.7
(-0.3)
A 		21.9
(-3)
A 		47.8
(3)
A 		26
avr 34.6
(-3) 		44.8
(-1.3) 		69.8
(3) 		52.4
(0) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 16.7
(-2.3)
A 		42.8
(0.9)
A 		10.9
(-3)
A 		35
(-0.1)
A 		48.6
(1.6)
A 		60.1
(3)
A 		49
B 49.7
(0.6)
A 		23.4
(-3)
A 		65.1
(2.7)
A 		50.8
(0.7)
A 		67.6
(3)
A 		63.2
(2.4)
A 		44
C 36.6
(-0.5)
A 		44.4
(0.1)
A 		4.5
(-3)
A 		13.7
(-2.3)
A 		66.2
(1.8)
A 		81.9
(3)
P 		77
avr 34.3
(-1.9) 		36.9
(-1.5) 		26.8
(-3) 		33.2
(-2.1) 		60.8
(1.9) 		68.4
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.3
(-1.3)
A 		14.1
(-1.9)
A 		24.4
(3)
A 		11.7
(-3)
A 		13
B 11.4
(-1)
A 		8.8
(-2)
A 		21.8
(3)
A 		6.2
(-3)
A 		16
C 8.6
(-0.1)
A 		9.7
(3)
A 		7.6
(-3)
A 		8.1
(-1.6)
A 		2
avr 11.8
(-1) 		10.9
(-1.6) 		17.9
(3) 		8.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.1
(-2.7)
A 		15.2
(3)
A 		2.4
(-3)
A 		8.9
(0)
A 		14.7
(2.8)
A 		14.6
(2.7)
A 		13
B 17.3
(-0.1)
A 		7.8
(-3)
A 		15.8
(-0.6)
A 		13.5
(-1.3)
A 		27.5
(3)
A 		23.6
(1.8)
A 		20
C 13.6
(-0.1)
A 		13.5
(-0.2)
A 		1.1
(-3)
A 		2.8
(-2.6)
A 		21.4
(1.6)
A 		27.4
(3)
P 		26
avr 11.3
(-1.1) 		12.2
(-0.8) 		6.4
(-3) 		8.4
(-2.2) 		21.2
(2.7) 		21.9
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10324
Sequence Type Exemplar sequence
Representative Public ID C33H5.16 NCBI
Target Description C33H5.16 /REP_DB=WormBase Gene ID /WP=CE04159 /TR=Q18415 /GB=AAA82276.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phophatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068892 NCBI Caenorhabditis elegans C33H5.16 (C33H5.16) mRNA, complete cds. 11/11 None
SNAP00000004487 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7801899:7803264:-1 10/11 None
C33H5.16 ENSEMBL cdna:known chromosome:CEL140:IV:7801899:7803124:-1 gene:C33H5.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004492 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004498 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7801904-7803130(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phophatase
Ensembl C33H5.16
Entrez Gene 183190 Entrez gene
SwissProt Q18415 EMBL-EBI
WormBase CE04159 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82276 Hypothetical protein C33H5.16 [Caenorhabditis elegans] ref|NP_501293.1| C33H5.16 [Caenorhabditis elegans] 1.0E-171
blast AAA82276 Hypothetical protein C33H5.16 [Caenorhabditis elegans] ref|NP_501293.1| C33H5.16 [Caenorhabditis elegans] 1.0E-155
blast AAK39391 Hypothetical protein ZK484.7 [Caenorhabditis elegans] ref|NP_491758.1| ZK484.7 [Caenorhabditis elegans] 1.0E-129
blast CAE60604 Hypothetical protein CBG04241 [Caenorhabditis briggsae] 1.0E-125
blast AAK39391 Hypothetical protein ZK484.7 [Caenorhabditis elegans] ref|NP_491758.1| ZK484.7 [Caenorhabditis elegans] 1.0E-111
blast CAE60604 Hypothetical protein CBG04241 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.4E-45
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.9E-87
Sequence
Target Sequence 
>C. ELEGANS:191764_AT
ccacacgactatatccacgcaaactttgtttcgacacctgccaatgcgaagcgcttcatc
tgtgctcaagcgcctctcgacaatacatgtgccgatttttggtacatgtgcctgcaggaa
cgtgttgaagcaatcttcatgctatgcaatttgatggagaagggagccaagaagtgcagc
gagtactatgctaccaaggagaagcctgaattggtatttcacgagaaagatcagaagatt
acagtgaagtacgaggcatctggaacggtgaagtttgtcaagcccacgaaagcagtggtg
aaggagacagtgctcattatcgagggtcctggaggtccaattgctgtgcactgctccgcc
ggcatcggtcgtactggatcagtcgtgatgattgagtacatgtgcgagcagcttctgaat
ggaaaccaaattgaagaaaccgacaagatcttgcagaagattcgtgagcaacgcaacaac
tcaattcaaacggaccaccagtacctcttcgttcaccaagtcatgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACACGACTATATCCACGCAAACT 100 275 262 Antisense
ACGCAAACTTTGTTTCGACACCTGC 112 93 278 Antisense
ACACCTGCCAATGCGAAGCGCTTCA 344 109 295 Antisense
GAAGCGCTTCATCTGTGCTCAAGCG 127 345 309 Antisense
CGCCTCTCGACAATACATGTGCCGA 347 257 332 Antisense
GAAGTTTGTCAAGCCCACGAAAGCA 636 317 531 Antisense
TGGAGGTCCAATTGCTGTGCACTGC 204 549 591 Antisense
GCATCGGTCGTACTGGATCAGTCGT 95 309 623 Antisense
GAGTACATGTGCGAGCAGCTTCTGA 525 399 655 Antisense
CAATTCAAACGGACCACCAGTACCT 129 179 743 Antisense
CCTCTTCGTTCACCAAGTCATGATG 646 267 765 Antisense
Sequence Source Affymetrix Proprietary Database