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[191763_s_at] Protein-tyrosine phosphatase /// protein-tyrosine phosphatase

Description F55F8.7 /REP_DB=WormBase Gene ID /WP=CE11200 /TR=P91345 /GB=AAB37811.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 88      4grp_total > 15      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 63.1
(-0.2)
A 		4.9
(-3)
A 		37.9
(-1.4)
A 		128.9
(3)
A 		124
B 79.1
(3)
A 		41.8
(-0.2)
A 		19.2
(-2.1)
A 		8.3
(-3)
A 		71
C 45.5
(-0.4)
A 		29.6
(-3)
A 		41
(-1.2)
A 		66.7
(3)
A 		37
avr 62.6
(2.2) 		25.4
(-3) 		32.7
(-2) 		68
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 51.6
(-1.9)
A 		23.9
(-3)
A 		51
(-1.9)
A 		38
(-2.5)
A 		131
(1.2)
M 		178.4
(3)
P 		155
B 38.8
(-3)
A 		53.5
(-2.1)
A 		41.8
(-2.8)
A 		52.4
(-2.2)
A 		106.1
(1.1)
P 		136.9
(3)
P 		98
C 39.8
(-2.2)
A 		48
(-2)
A 		13.7
(-3)
A 		28.4
(-2.6)
A 		91.1
(-0.7)
M 		219.1
(3)
P 		205
avr 43.4
(-2.7) 		41.8
(-2.7) 		35.5
(-3) 		39.6
(-2.8) 		109.4
(0.1) 		178.1
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 23
(3)
A 		1.1
(-3)
A 		9.9
(-0.6)
A 		18.9
(1.9)
A 		22
B 25.2
(3)
A 		10.3
(-0.8)
A 		4.4
(-2.3)
A 		1.8
(-3)
A 		23
C 15.1
(3)
A 		8.5
(-3)
A 		14.3
(2.3)
A 		11.2
(-0.5)
A 		7
avr 21.1
(3) 		6.6
(-3) 		9.5
(-1.8) 		10.6
(-1.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 9.5
(-2.8)
A 		8.5
(-3)
A 		11.1
(-2.6)
A 		9.6
(-2.8)
A 		39.5
(2.3)
M 		43.4
(3)
P 		35
B 13.5
(-2.5)
A 		17.8
(-1.9)
A 		10.1
(-3)
A 		13.9
(-2.4)
A 		43.1
(1.8)
P 		51.1
(3)
P 		41
C 14.8
(-2)
A 		14.7
(-2)
A 		3.5
(-3)
A 		5.7
(-2.8)
A 		29.5
(-0.8)
M 		73.4
(3)
P 		70
avr 12.6
(-2.4) 		13.7
(-2.3) 		8.2
(-3) 		9.7
(-2.8) 		37.4
(0.7) 		56
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191763_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.563
Sequence Type Exemplar sequence
Representative Public ID F55F8.7 NCBI
Target Description F55F8.7 /REP_DB=WormBase Gene ID /WP=CE11200 /TR=P91345 /GB=AAB37811.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060053(11), NM_059256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060053 NCBI Caenorhabditis elegans F25H5.7 (F25H5.7) mRNA, complete cds. 11/11 A 
NM_059256 NCBI Caenorhabditis elegans F55F8.7 (F55F8.7) mRNA, complete cds. 11/11 A 
SNAP00000024315 ENSEMBL cdna:SNAP chromosome:CEL140:I:9163686:9165535:1 11/11 None
GENEFINDER00000024326 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9163686:9165535:1 11/11 None
SNAP00000024471 ENSEMBL cdna:SNAP chromosome:CEL140:I:5659500:5661215:-1 11/11 None
GENEFINDER00000024479 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5659500:5661215:-1 11/11 None
F55F8.7 ENSEMBL cdna:known chromosome:CEL140:I:5659135:5661215:-1 gene:F55F8.7 11/11 A 
F25H5.7 ENSEMBL cdna:known chromosome:CEL140:I:9163663:9165535:1 gene:F25H5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5659134-5661215(-) 96.08 100.0
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
protein-tyrosine phosphatase
Ensembl F55F8.7
F25H5.7
Entrez Gene 172228 Entrez gene
172740 Entrez gene
SwissProt P91345 EMBL-EBI
WormBase CE15903 Wormbase
CE11200 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02988 Hypothetical protein F25H5.7 [Caenorhabditis elegans] ref|NP_492454.1| F25H5.7 [Caenorhabditis elegans] 0.0
blast AAB37811 Hypothetical protein F55F8.7 [Caenorhabditis elegans] ref|NP_491657.1| F55F8.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.1E-99
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-100
Sequence
Target Sequence 
>C. ELEGANS:191763_S_AT
gaagaagccatcgcaggaacaattttgaattctttgactgtaatcaacacggaggatgcc
acttctgaaccattgtacatgaatcatgtgcaagttccatggtggccagatcaattggct
ccggaggatgctcgtccgatgatcgaattgtataaatgggtgaagaaggtgaatccaaaa
gaaaagccaatttgtgttcattgtagtgctggtgttggaagaactgccacttttgttggt
atcgactacgcaactatccgcataatggaaaatccgaatattgagatgttggatattgtc
cgtgagatgcgtgcaatgcgtttccaagcagtccaatctcatatgcaattcctattcctt
tatgttgttctgatggagtactttattggggaaggagtcgttgaacgtaccggacaaatt
gacacttttatgactcaatacaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAGCCATCGCAGGAACAATTT 482 339 946 Antisense
GTGCAAGTTCCATGGTGGCCAGATC 508 481 1033 Antisense
GATCAATTGGCTCCGGAGGATGCTC 657 421 1054 Antisense
GAGGATGCTCGTCCGATGATCGAAT 447 403 1069 Antisense
GAACTGCCACTTTTGTTGGTATCGA 10 349 1166 Antisense
TGTTGGATATTGTCCGTGAGATGCG 407 563 1232 Antisense
AGATGCGTGCAATGCGTTTCCAAGC 415 67 1250 Antisense
AATCTCATATGCAATTCCTATTCCT 380 169 1280 Antisense
GCAATTCCTATTCCTTTATGTTGTT 497 323 1290 Antisense
TATTGGGGAAGGAGTCGTTGAACGT 190 1 1329 Antisense
GACACTTTTATGACTCAATACAAGA 299 367 1366 Antisense
Sequence Source Affymetrix Proprietary Database